AT2G01860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 975 (EMB975); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:388283..389743 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55652.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 486 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILHCPVSLS LSFHLNLRTS RIGNIGVTRV NASQRNHSKK LTKNLRNPRR TKLPPDFGVN LFLRKPKIEP LVIDDDDEQV QESVNDDDDA VVWEPEEIEA 101: ISSLFQKRIP QKPDKPSRVR PLPLPQPHKL RPLGLPTPKK NIIRSPALSS VSKQVYKDPS FLIGLAREIK SLPSSDADVS LVLNKWVSFL RKGSLSTTIR 201: ELGHMGLPER ALQTYHWAEK HSHLVPDNRI LASTIQVLAK HHELKLLKFD NSLASKNVIE AMIKGCIEGG WLNLARKLIL ISKSNNRILD SSVYVKMILE 301: IAKNPDKYHL VVALLEELKK REDLKLSQQD CTSIMKICVK LGEFELVESL FDWFKASNRE PSVVMYTTMI HSRYSEQKYR EAMSVVWEME ESNCLLDLPA 401: YRVVIKLFVA LDDLGRAMRY YSKLKEAGFS PTYDIYRDMI SVYTASGRLT KCKEICKEVE DAGLRLDKDT SFRLLQLEKQ TMSLLH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)