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AT2G01740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.963
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1); Has 57588 Blast hits to 14618 proteins in 307 species: Archae - 5; Bacteria - 72; Metazoa - 670; Fungi - 805; Plants - 54302; Viruses - 0; Other Eukaryotes - 1734 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006069EMBL:CP002685EnsemblPlants:AT2G01740EnsemblPlants:AT2G01740.1entrez:814704
Gene3D:1.25.40.10GeneID:814704Genevisible:Q9ZUA2Gramene:AT2G01740.1hmmpanther:PTHR24015HOGENOM:HOG000241911InParanoid:Q9ZUA2
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G01740OMA:FCKSGELPaxDb:Q9ZUA2Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q9ZUA2Pfscan:PS51375PhylomeDB:Q9ZUA2PIR:E84428PRIDE:Q9ZUA2PRO:PR:Q9ZUA2
PROSITE:PS51375ProteinModelPortal:Q9ZUA2Proteomes:UP000006548RefSeq:NP_178283.1SMR:Q9ZUA2STRING:3702.AT2G01740.1SUPFAM:SSF48452
TAIR:AT2G01740TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.47033UniGene:At.66449UniProt:Q9ZUA2
Coordinates (TAIR10) chr2:-:326136..327815
Molecular Weight (calculated) 62494.20 Da
IEP (calculated) 6.42
GRAVY (calculated) 0.07
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MVREALQFLS RLRKSSNLPD PFTCNKHIHQ LINSNCGILS LKFLAYLVSR GYTPHRSSFN SVVSFVCKLG QVKFAEDIVH SMPRFGCEPD VISYNSLIDG
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)