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AT2G01720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17151019
AmiGO : plasma membrane 17317660
TAIR : plasma membrane 17317660
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:16287169 (2006): extracellular region
  • PMID:15574830 (2004): plasma membrane
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribophorin I
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT1G76400.1); Has 386 Blast hits to 386 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G01720-MONOMERBioGrid:104EC:2.4.99.18eggNOG:ENOG410XQVZeggNOG:KOG2291EMBL:AC006069EMBL:AK226319
EMBL:BT022017EMBL:CP002685EnsemblPlants:AT2G01720EnsemblPlants:AT2G01720.1entrez:814701GeneID:814701Genevisible:Q9ZUA0
GO:GO:0004579GO:GO:0005774GO:GO:0005783GO:GO:0005789GO:GO:0005886GO:GO:0006486GO:GO:0009505
GO:GO:0016021Gramene:AT2G01720.1hmmpanther:PTHR21049HOGENOM:HOG000247000InParanoid:Q9ZUA0InterPro:IPR007676KEGG:00510+2.4.99.18
KEGG:00513+2.4.99.18KEGG:ath:AT2G01720KO:K12666OMA:NDATAPEPANTHER:PTHR21049PaxDb:Q9ZUA0Pfam:PF04597
Pfam:Q9ZUA0PhylomeDB:Q9ZUA0PIR:C84428PRIDE:Q9ZUA0PRO:PR:Q9ZUA0ProteinModelPortal:Q9ZUA0Proteomes:UP000006548
RefSeq:NP_178281.1STRING:3702.AT2G01720.1TAIR:AT2G01720TMHMM:TMhelixUniGene:At.47531UniPathway:UPA00378UniProt:Q9ZUA0
Coordinates (TAIR10) chr2:-:317193..320016
Molecular Weight (calculated) 52221.90 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.01
Length 464 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARIGIFSV FVAVLLSISA FSSAQDLQIV NAERRIDLSS HIVKAFLTLK VENIGKDPAA EMLLAFPPTQ IKNLAMVQAL ATTGKKKKKT YLPLDVKPTE
101: QPDAPNDTGY YRVTFISPLG PGETVSLEVL YILTHSLEPF PVEITQSESQ LVYYHDSAVI LSPYHVKQQT TFIKTPSTRV ESFTSIEPAN RAGKEIKYGP
201: YENRASYSYT PVIIHFENNS PFAVVEELVR EIEISHWGSL QITENYRLTH GGARHKGVFS RVDYQSKRSV SGASSFNALL AVLPPRVNSV YYRDEIGNIS
301: TSHLRTGFRK SELEFEPRYP LFGGWSATFI IGYRVPLEDY LFEASDGRRY LNFTFGCPLV ETIVNKLTIK VVLPEGSKDP SAVLPFTVNQ ELQVKYSYLD
401: IVGRTVVVLQ KDNVVPTHNV PFQVYYTFKP IYMLAEPFML VSAFFLVFVA SLAYVHIDLN IVRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)