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AT2G01650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant UBX domain-containing protein 2
Curator
Summary (TAIR10)
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational
Description (TAIR10)
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQQKeggNOG:KOG2699EMBL:AC006069EMBL:AK118911EMBL:AY084317EMBL:AY572782EMBL:BT005408
EMBL:CP002685EnsemblPlants:AT2G01650EnsemblPlants:AT2G01650.1entrez:814694GeneID:814694Genevisible:Q9ZU93GO:GO:0009620
GO:GO:0016020GO:GO:0046872GO:GO:0050832Gramene:AT2G01650.1hmmpanther:PTHR23153hmmpanther:PTHR23153:SF39InterPro:IPR001012
InterPro:IPR018997InterPro:IPR029071iPTMnet:Q9ZU93KEGG:ath:AT2G01650KO:K14011OMA:LIPRSYKPaxDb:Q9ZU93
Pfam:PF09409Pfam:Q9ZU93Pfscan:PS50033PhylomeDB:Q9ZU93PIR:D84427PRIDE:Q9ZU93PRO:PR:Q9ZU93
PROSITE:PS50033ProteinModelPortal:Q9ZU93Proteomes:UP000006548RefSeq:NP_565271.1SMART:SM00580STRING:3702.AT2G01650.1SUPFAM:0052385
SUPFAM:SSF143503SUPFAM:SSF54236TAIR:AT2G01650tair10-symbols:PUX2UniGene:At.43257UniProt:Q9ZU93
Coordinates (TAIR10) chr2:-:284851..286394
Molecular Weight (calculated) 51066.60 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.54
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDVKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSSSSSAP PVNPIQNRFN SSQAPNPTPR PKPNPNPLPE KPLSSSDQKI SGSTRNPDHD PVRAPQDGFD
101: PYGAFITSSN RSQNGYSLSM FECPICKNPF TSEEEVSVHV ESCLGDTNGD ESSFEKDNND NDKSEMEKLV VVYLSGKPSE SSIDVLLRLF KNIVKEPENA
201: KFRKVRMSNA KIKEAIGDVA GGVELLELVG FELKEENDEI WAVMDVPSEE QSILINKVVG YLEKRKTESS GSSAQVMEPV APKKIDREIR VFFSVSENVA
301: SRIEVPDSFY SLSADEIKRE ADLRRKKIAE SQLLIPRSYK EKQAKAARKR YKRSMIRVQF PDGVVLQGVF APWEPTFALY EFVSSALKEP SLQFELLDPV
401: LVKRRVIPHT PAPGQKPITL EDEELVPSAL IRFRPIETDS LVFTGLRNEL LEISEPLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)