AT2G01460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.897 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, kinase activity, nucleotide binding, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), ATPase, AAA+ type, core (InterPro:IPR003593), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: Phosphoribulokinase / Uridine kinase family (TAIR:AT1G26190.1); Has 3953 Blast hits to 3156 proteins in 1342 species: Archae - 38; Bacteria - 3073; Metazoa - 244; Fungi - 122; Plants - 227; Viruses - 4; Other Eukaryotes - 245 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:206136..211765 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106665.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 955 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDEVVQRVF QEGGRDFFQQ QPSTSSSSSS ILQSLPLHVA FDHGYYLLVK SIQELREKKD GIVTVGIGGP SGSGKSSLAE KVASVIGCTV IAMEDYRDSL 101: DDGNELETLD FDALVQNLED LINGKDTLAP VFDFQQKKRV DSKMVKTSSG VVIVDGTYAL HARLRSLLDI RVAVVGGVHF SLLSKVRYDI GDSCSLDYLI 201: DSIFPLFRKH IEPDLHHAQI RINNSFVSSF REAIYKLKCK TEIVTSFPQE SDVQKDNFIE MYLRPPSASE EARINDWIKV RQAGIRYYLS LGDQRIVDKH 301: FIIRPKAEFE VGRMTLGGLL ALGYNVVVSY KRASTAVSYG NLSLSRETID TLGETFLVLR GTDRKSVGAE ALRMGITGPW ITKSYLELIL ESKVQQNLNF 401: CKLTHFAGVP RLNTPPLLQP SPVITNQEKQ IVAPKPIRTT PNIVTRLEDL SQPWTRSPTK SQMEPMVATW HFTSYDPPHS VSSVVDSSFR DNMRLVPMPD 501: SYDLDRGLLL SVQAIQALLE NKGPPVIVGI GGPSGSGKTS LAHKMANIVG CEVVSLESYF KSEQVKDFKH DDFSSLDLPL LSKNISDITN SRRTKLPIFD 601: LETGTRCGFK ELEVPEECGV IIFEGVYALH PEIRQSLDLW VAVVGGVHSH LISRVQRDKS RIGCFMSQNE IMMTVFPMFQ QHIEPHLVHA HVKIRNDFDP 701: VLSPESSLFV LKSNKQVPYQ DILSILDSTK FCSSVQNFID IYFRLSGLPA NGQLSDSDCI RVRICEGRFA VLIREPIREG NFIIQPKVDF DISVSTVAGL 801: LNLGYQAVAY IEASAFIYQD GKVNVPSPYI QIKGANKEAV TAAGSALKLD GSYTTKSYLQ IVLERLPPVQ RSSSGIHTQQ AARLQELVEF IQSQGSSNSV 901: SESSPRRDGS SIDNVLEDMQ SRIKRLERWH TINTVLWTFL MSALVGYSLY QRKRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)