AT2G01410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.797 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NHL domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:175209..176372 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43024.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKANMSSSSS TRYRSFFVFP ILFAVLFLGL LIPSSADNRH VINFRSPGLY PEGLTWDPRD QHFLVGSLHS RTIHSVSDAG VIETLISDLD LPENSTILGL 101: AVDSTNRRLL ACIQSLPPLP PFSALASYDL RSGGRRVFLS PLPSLPGDDE DIARDVANDV AVDFKGNAYV TNSAKNFIWK VDRDGAASIF SKSPLFNSQP 201: VAADADASFR DCGLNGIVYI SKGYLLVVQS NTGKVFKVDE DSGNARLVLL NGDLIAADGM TRRRRDGTVM VVSQKKLWLL KSQDSWSEGV VYDEIDLDIE 301: GFPTAVTVAG RDRIYVLYGR VMEGIMGSSY KEEGAREWFG IEEVWSEKEG GEDKIWLYVL IGFGFAYFCF WRFQMKKLIT NMDKKIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)