AT2G01280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclin/Brf1-like TBP-binding protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:145676..148784 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61432.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVWCKHCAKN VPKIRPFDGG LACDLCGRIL ENFNFSTDVT FVKNAAGQVC NIVTSVGNSS SRDRRRRKAI DELRNLKDAL GIGDERDDVV DMAAVFYEAA 101: MDQNFTKGRR AELVQSSCLY LACSYLRVSV YELGSVYLQL CEMLYLVQNK NYEELVDPSI FIPRFTNSLL KGAHAKAKDV ANTAKNIISS MKRDWIQTGR 201: KPSGICGAAI YMAALSHGIM YSRADIAKVV HMCEATITKR LNEFANTEAG SLTVDELDES EEILRKETFT PRPNSDKGVV NCKHKDLKRF GYGLCKSCHD 301: DFIIISGGVV GGSDPPAYQR AEKERMEKAA REENEGGIGN LNHDEQVNVS KRAKKCSEKG EGETYGGERH AEYSDESDIC SDDDDSEVEH VLLGEDETRL 401: KTTAWNLQNK DYLEEQAEKE AALKAANCPE DARNLVEASK AAVANSRKEK RRKRAEEAKN APPSATATEA SYTETQRVNQ HHVLDELLDT SPTQKKPRTE 501: TVTEKKKEEH EIVEDEEDEE DYAAPHADEN FYEDEVEEEE NGYDFGLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)