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AT2G01250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L30/L7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioGrid:56eggNOG:COG1841eggNOG:KOG3184EMBL:AC006200EMBL:AF370484EMBL:AY045994EMBL:AY079328
EMBL:AY081698EMBL:AY085139EMBL:CP002685EMBL:Z29141EnsemblPlants:AT2G01250EnsemblPlants:AT2G01250.1entrez:814652
ExpressionAtlas:P60040Gene3D:3.30.1390.20GeneID:814652Genevisible:P60040GO:GO:0005618GO:GO:0005773GO:GO:0005774
GO:GO:0005829GO:GO:0005886GO:GO:0009507GO:GO:0016020GO:GO:0022625GO:GO:0022626hmmpanther:PTHR11524
HOGENOM:HOG000170917InParanoid:P60040IntAct:P60040InterPro:IPR005998InterPro:IPR012988InterPro:IPR016082InterPro:IPR018038
ncoils:CoilOMA:PNHKSVRPaxDb:P60040Pfam:P60040Pfam:PF00327Pfam:PF08079PhylomeDB:P60040
PIR:D84422PRIDE:P60040PRO:PR:P60040PROSITE:PS00634ProteinModelPortal:P60040Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_178234.1scanprosite:PS00634
STRING:3702.AT2G01250.1SUPFAM:SSF55129TAIR:AT2G01250TIGRfam:TIGR01310TIGRFAMs:TIGR01310UniGene:At.22748UniProt:P60040
Coordinates (TAIR10) chr2:-:132943..134264
Molecular Weight (calculated) 28172.70 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.57
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)