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AT2G01220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.781
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotidylyl transferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.2); Has 432 Blast hits to 425 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 78; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK4ReggNOG:ENOG410Y6Z3EMBL:CP002685EnsemblPlants:AT2G01220EnsemblPlants:AT2G01220.1entrez:814650ExpressionAtlas:F4IM97
Gene3D:3.40.50.620GeneID:814650GO:GO:0009058GO:GO:0016740Gramene:AT2G01220.1hmmpanther:PTHR31285hmmpanther:PTHR31285:SF0
InterPro:IPR004821InterPro:IPR014729KEGG:ath:AT2G01220PaxDb:F4IM97Pfam:PF01467PRIDE:F4IM97ProteinModelPortal:F4IM97
Proteomes:UP000006548RefSeq:NP_178231.2STRING:3702.AT2G01220.2SUPFAM:SSF52374TAIR:AT2G01220UniGene:At.42510UniProt:F4IM97
Coordinates (TAIR10) chr2:+:123301..126213
Molecular Weight (calculated) 42149.90 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.04
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDAAIRTVV EAIHSSPTQA VVYLCGGASL ALGWLMSVPG ASNTLLESVV PYSRVSMVQL LGRVPSQHCS QALAKEMALL AYNRALKLSK PGYPVLGVGF
101: TGSLVTSRPK RGDHRFFLSM RASDRILESS VTLTKNLRSR EEEDKVSSCA LIQAMAKACQ VSGTLDSGLT ESEVPYESET HFTEEQELEQ LINGHLCCKI
201: YPFSGAHGSD EDRKIILPGS FNPLHEGHLK LLEVAMSVCG GGYPCFEISA INADKPPLTI AQIKDRVKQF EVVGKTIIVS NQPYFYKKAE LFPGSSFVIG
301: ADTAARLVNP KYYEGSIKRM LEILGDCKRT GCTFLVGGRN VDGVFKVLED VDIPEEIIDM FISIPADIFR MDISSTEIRK KQGGGTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)