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AT2G01150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.901
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING-H2 finger protein 2B
Curator
Summary (TAIR10)
Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.
Computational
Description (TAIR10)
RING-H2 finger protein 2B (RHA2B); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A2A (TAIR:AT1G15100.1); Has 8536 Blast hits to 8514 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2151; Fungi - 713; Plants - 4534; Viruses - 16; Other Eukaryotes - 1122 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:BT025510EnsemblPlants:AT2G01150EnsemblPlants:AT2G01150.1entrez:814644ExpressionAtlas:Q1H5F4
Gene3D:3.30.40.10GeneID:814644GO:GO:0008270Gramene:AT2G01150.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF175InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT2G01150KO:K16282OMA:FNCPICRPaxDb:Q1H5F4Pfam:PF13639Pfam:Q9ZU51
Pfscan:PS50089PhylomeDB:Q1H5F4PRIDE:Q1H5F4PROSITE:PS50089ProteinModelPortal:Q1H5F4RefSeq:NP_565253.1SMART:SM00184
SMR:Q1H5F4STRING:3702.AT2G01150.1SUPFAM:SSF57850TAIR:AT2G01150tair10-symbols:RHA2BUniGene:At.21443UniProt:Q1H5F4
UniProt:Q9ZU51
Coordinates (TAIR10) chr2:+:100703..101146
Molecular Weight (calculated) 16241.60 Da
IEP (calculated) 8.16
GRAVY (calculated) 0.07
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLQGQLSDV SSDSIPLMLL ALLATFFRHV RSLLLFPSSA PVVVVTSNLS VLADQLNLNR LFSYRYSDNA ASDCIVCLSK LKTGEEVRKL DCRHVFHKQC
101: LEGWLQHLNF NCPLCRSPLL PHHHQGHGSD ASISAFPLRS TSTASSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)