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AT2G01080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWWWeggNOG:ENOG4111UA9EMBL:AC006837EMBL:CP002685EnsemblPlants:AT2G01080EnsemblPlants:AT2G01080.1entrez:814636
GeneID:814636GO:GO:0005886GO:GO:0016021Gramene:AT2G01080.1hmmpanther:PTHR31234hmmpanther:PTHR31234:SF8InterPro:IPR004864
KEGG:ath:AT2G01080OMA:SVTYKQCPfam:PF03168PhylomeDB:Q9SJV8PIR:D84420Proteomes:UP000006548RefSeq:NP_565250.1
SUPFAM:0051044TAIR:AT2G01080TMHMM:TMhelixUniGene:At.14053UniGene:At.42518UniProt:Q9SJV8
Coordinates (TAIR10) chr2:+:78038..79176
Molecular Weight (calculated) 24765.20 Da
IEP (calculated) 9.21
GRAVY (calculated) 0.22
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPPPSSSRA GLNGDPIAAQ NQQPYYRSYS SSSSASLKGC CCCLFLLFAF LALLVLAVVL IVILAVKPKK PQFDLQQVAV VYMGISNPSA VLDPTTASLS
101: LTIRMLFTAV NPNKVGIRYG ESSFTVMYKG MPLGRATVPG FYQDAHSTKN VEATISVDRV NLMQAHAADL VRDASLNDRV ELTVRGDVGA KIRVMNFDSP
201: GVQVSVNCGI GISPRKQALI YKQCGFDGLS V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)