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AT2G01060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb-like HTH transcriptional regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKNEeggNOG:ENOG4111GBREMBL:AC006837EMBL:AF370550EMBL:AY084725EMBL:BT000013EMBL:CP002685
EnsemblPlants:AT2G01060EnsemblPlants:AT2G01060.1entrez:814630ExpressionAtlas:Q9SJW0Gene3D:1.10.10.60GeneID:814630GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT2G01060.1hmmpanther:PTHR31314hmmpanther:PTHR31314:SF5
HOGENOM:HOG000239390InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930InterPro:IPR025756KEGG:ath:AT2G01060
ncoils:CoilOMA:TPDSGCNPfam:PF00249Pfam:PF14379Pfscan:PS51294PhylomeDB:Q9SJW0PIR:B84420
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_178216.1SMR:Q9SJW0STRING:3702.AT2G01060.1SUPFAM:SSF46689TAIR:AT2G01060
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.24449UniProt:Q9SJW0
Coordinates (TAIR10) chr2:-:73456..74902
Molecular Weight (calculated) 31076.40 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.73
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MEADNGGPNS SHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV KSHLQKYRLA KYLPDSSSEG KKTDKKESGD MLSGLDGSSG
101: MQITEALKLQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLGEPSAPVT GDSDPATPAP TSESPLQDKS GKDCGPDKSL SVDESLSSYR
201: EPLTPDSGCN IGSPDESTGE ERLSKKPRLV RGAAGYTPDI VVGHPILESG LNTSYHQSDH VLAFDQPSTS LLGAEEQLDK VSGDNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)