AT1G80910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1712) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G16020.2); Has 182 Blast hits to 182 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30401143..30403466 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55431.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||
| Length | 497 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGMASMSSGT ESLRLCVFDL RRGQHEGQEL DKILFFYPPD LTFSTQLSVI GLSEGLITFT RLFSPEAACE VIEAERHSHV FYEAEPDIWM VMIVEKNKEI 101: EAVWRIDALR RVLKEVHSLF VMFQGSIRAL LEKEPTGGLV RSHLYPFITD YLNDLFVGKK QQLPSFRDTL KERGTVQMLT LARDAALEVQ SLVGVLDSCA 201: GTVRCHSVIL FHDLLVSTTL SPDDTVDLFA FSVMRLTTNA LSSGTSSWSY LRKGSGSPQI SSRSTTVPPL GSGGTLPSGN GSSTGRVIRP LQHDKWSKGK 301: DGFLVTDIWG LDATPTILIQ KTQESFYLLT YQYKSLTLVL LVPIAAIVNG ELDISFVKQQ VIENASTKIL KVEEKLSKGW GGENAYHVSG YRYLLVDNDM 401: EVSRASPPGK VATLAKESLL ALNKLREEVD TEKNRSKQEK DMEICIRAKN NTWVIARLNR GKELYMALEK ASETLLDATD SVQRFSNRYC SGAFPMD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)