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AT1G80880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 26859 Blast hits to 9675 proteins in 280 species: Archae - 3; Bacteria - 25; Metazoa - 333; Fungi - 256; Plants - 25481; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011713EMBL:CP002684
EMBL:DQ446448EnsemblPlants:AT1G80880EnsemblPlants:AT1G80880.1entrez:844428
Gene3D:1.25.40.10GeneID:844428Genevisible:Q9SAH2GO:GO:0005739
Gramene:AT1G80880.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF602HOGENOM:HOG000006320
InParanoid:Q9SAH2InterPro:IPR002885InterPro:IPR011990InterPro:IPR033443
KEGG:ath:AT1G80880OMA:AFLAFKWPaxDb:Q9SAH2Pfam:PF01535
Pfam:PF13041Pfam:PF17177Pfam:Q9SAH2Pfscan:PS51375
PhylomeDB:Q9SAH2PIR:F96841PRIDE:Q9SAH2PRO:PR:Q9SAH2
PROSITE:PS51375ProteinModelPortal:Q9SAH2Proteomes:UP000006548RefSeq:NP_178203.1
SMR:Q9SAH2STRING:3702.AT1G80880.1TAIR:AT1G80880TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.52583UniProt:Q9SAH2
Coordinates (TAIR10) chr1:-:30395194..30396921
Molecular Weight (calculated) 61711.50 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.26
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIVAIGRK LARTPQWRIV QHQSLLRRAV STSFSSSVSQ NHSFSSAFHR AGHVHSQVLS YLPHFASSNR FSTKTISETF DINLTALAPL EKGLIDLIRQ
101: VSELESEADA MASLEDSSFD LNHDSFYSLI WELRDEWRLA FLAFKWGEKR GCDDQKSCDL MIWVLGNHQK FNIAWCLIRD MFNVSKDTRK AMFLMMDRYA
201: AANDTSQAIR TFDIMDKFKH TPYDEAFQGL LCALCRHGHI EKAEEFMLAS KKLFPVDVEG FNVILNGWCN IWTDVTEAKR IWREMGNYCI TPNKDSYSHM
301: ISCFSKVGNL FDSLRLYDEM KKRGLAPGIE VYNSLVYVLT REDCFDEAMK LMKKLNEEGL KPDSVTYNSM IRPLCEAGKL DVARNVLATM ISENLSPTVD
401: TFHAFLEAVN FEKTLEVLGQ MKISDLGPTE ETFLLILGKL FKGKQPENAL KIWAEMDRFE IVANPALYLA TIQGLLSCGW LEKAREIYSE MKSKGFVGNP
501: MLQKLLEEQK VKGVRKSKRM NLQKVGSQEG YKGQRSVDRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)