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AT1G80820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.398
golgi 0.267
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cinnamoyl coa reductase
Curator
Summary (TAIR10)
Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.
Computational
Description (TAIR10)
cinnamoyl coa reductase (CCR2); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase 1 (TAIR:AT1G15950.1); Has 10779 Blast hits to 10766 proteins in 1817 species: Archae - 140; Bacteria - 4512; Metazoa - 410; Fungi - 946; Plants - 2512; Viruses - 14; Other Eukaryotes - 2245 (source: NCBI BLink).
Protein Annotations
DNASU:844421EC:1.2.1.44eggNOG:COG0451eggNOG:KOG1502EMBL:AC011713EMBL:AF320623EMBL:AK227576
EMBL:AY087148EMBL:BT005826EMBL:CP002684EnsemblPlants:AT1G80820EnsemblPlants:AT1G80820.1entrez:844421Gene3D:3.40.50.720
GeneID:844421Genevisible:Q9SAH9GO:GO:0006952GO:GO:0007623GO:GO:0009409GO:GO:0009699GO:GO:0016621
GO:GO:0042754GO:GO:0050662Gramene:AT1G80820.1gramene_pathway:1.2.1.44gramene_pathway:PWY-361gramene_plant_reactome:1119316gramene_plant_reactome:6874633
gramene_plant_reactome:6876110hmmpanther:PTHR10366hmmpanther:PTHR10366:SF404HOGENOM:HOG000167998InterPro:IPR001509InterPro:IPR016040KEGG:ath:AT1G80820
KO:K09753OMA:INASSIHPaxDb:Q9SAH9Pfam:PF01370Pfam:Q9SAH9PhylomeDB:Q9SAH9PIR:G96840
PRO:PR:Q9SAH9ProteinModelPortal:Q9SAH9Proteomes:UP000006548RefSeq:NP_178197.1SABIO-RK:Q9SAH9SMR:Q9SAH9STRING:3702.AT1G80820.1
SUPFAM:SSF51735TAIR:AT1G80820tair10-symbols:ATCCR2tair10-symbols:CCR2UniGene:At.11770UniPathway:UPA00711UniProt:Q9SAH9
Coordinates (TAIR10) chr1:+:30370646..30372460
Molecular Weight (calculated) 36620.00 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.17
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVDGKLVCV TGAGGYIASW IVKLLLERGY TVRGTVRNPT DPKNNHLREL QGAKERLTLH SADLLDYEAL CATIDGCDGV FHTASPMTDD PETMLEPAVN
101: GAKFVIDAAA KAKVKRVVFT SSIGAVYMNP NRDTQAIVDE NCWSDLDFCK NTKNWYCYGK MLAEQSAWET AKAKGVDLVV LNPVLVLGPP LQSAINASLV
201: HILKYLTGSA KTYANLTQVY VDVRDVALGH VLVYEAPSAS GRYILAETAL HRGEVVEILA KFFPEYPLPT KCSDEKNPRA KPYKFTTQKI KDLGLEFKPI
301: KQSLYESVKS LQEKGHLPLP QDSNQNEVII ES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)