AT1G80790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 cytosol 0.000 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : XH/XS domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 81745 Blast hits to 47168 proteins in 2099 species: Archae - 1218; Bacteria - 10615; Metazoa - 37220; Fungi - 5411; Plants - 3180; Viruses - 320; Other Eukaryotes - 23781 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30360280..30362856 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74297.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 634 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNSSDEESE ISESEIDVYY EKPYEKLMNG DYKVKVKDTF RCPFCAGKKK QHYKYKELLA HASGVAKGSA SRSAKQKANH FALAKYMENE LAGDADVPRP 101: QIPSSSTEQS QAVVDDIYVW PWMGIVINPV RRTDNKNVLL DSAYWLKKLA RFNPLEVKTL WLDQESVVAV IPQFNSGWSG FKSVTELEKE YEIRGCGRKD 201: WIDKRGDWRS KAYGWCARAD DYNSQGSIAE YLSKVGKLRS FSDITKEEIQ NKSIVVDDLA NKIAMTNEDL NKLQYMNNEK TLSLRRVLIE KDELDRVYKQ 301: ETKKMQELSR EKINRIFREK ERLTNELEAK MNNLKIWSKQ LDKKQALTEL ERQKLDEDKK KSDVMNSSLQ LASLEQKKTD DRVLRLVDEH KRKKEETLNK 401: ILQLEKELDS KQKLQMEIQE LKGKLKVMKH EDEDDEGIKK KMKKMKEELE EKCSELQDLE DTNSALMVKE RKSNDEIVEA RKFLITELRE LVSDRNIIRV 501: KRMGELEEKP FMTACRQRCT VEEEAQVQYA MLCSKWQEKV KDSAWQPFKH VGTGDRKKEV VDEEDEEIKK LREEWGEEVK NAVKTALEEL NEFNPSGRYS 601: VPELWNSKQG RKATLKEVID YITQQVKTLK RRRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)