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AT1G80780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.950
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G32070.1); Has 910 Blast hits to 900 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioGrid:29635DNASU:844417EC:3.1.13.4eggNOG:COG5228eggNOG:KOG0304EMBL:AC011713EMBL:AY070420
EMBL:AY096747EMBL:CP002684EnsemblPlants:AT1G80780EnsemblPlants:AT1G80780.1EnsemblPlants:AT1G80780.2entrez:844417ExpressionAtlas:Q9SAI2
Gene3D:3.30.420.10GeneID:844417Genevisible:Q9SAI2GO:GO:0003723GO:GO:0004535GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0006355GO:GO:0046872hmmpanther:PTHR10797HOGENOM:HOG000173077InParanoid:Q9SAI2IntAct:Q9SAI2
InterPro:IPR006941InterPro:IPR012337PaxDb:Q9SAI2Pfam:PF04857Pfam:Q9SAI2PhylomeDB:Q9SAI2PIR:D96840
PRIDE:Q9SAI2PRO:PR:Q9SAI2ProteinModelPortal:Q9SAI2Proteomes:UP000006548RefSeq:NP_178193.1RefSeq:NP_849915.1SMR:Q9SAI2
STRING:3702.AT1G80780.3SUPFAM:SSF53098TAIR:AT1G80780UniGene:At.11767UniProt:Q9SAI2
Coordinates (TAIR10) chr1:+:30358517..30359341
Molecular Weight (calculated) 31202.40 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.06
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)