AT1G80770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pigment defective 318 (PDE318); FUNCTIONS IN: ferrous iron transmembrane transporter activity, GTP binding; INVOLVED IN: ferrous iron transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), Ferrous iron transport protein B, N-terminal (InterPro:IPR011619); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 11067 Blast hits to 11052 proteins in 2859 species: Archae - 320; Bacteria - 7505; Metazoa - 379; Fungi - 348; Plants - 242; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30355266..30357786 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50416.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLASSLVPH QWRLLTSPQL SLQAFIFSTA STTKSHTFWS PSLRQCRNLQ TALSPIVSSS YLPTSYITQK QIEIPTSPEK QSPPVQEGLG AFQKLPMVMP 101: SIDLYASALR KSKRVQPTKG IANIAKRERN RGAKQLDAFM KELALPLKGY MESFPRKKLL HPYERSLIDL TLGDGKYEEV LGKVDVLRKK VQSVGKEHAS 201: LCAKALSKKE AEERLSEGVE KLELVFQQQG GAVDDLLTIA KVLRAMPVVD LEMPTLCLVG APNVGKSSLV RILSTGKPEI CNYPFTTRGI LMGHIVLNYQ 301: RFQVTDTPGL LRRCDEDRNN LEKLTLAVLT HLPTAVLYVH DLTGECGTSP SDQFQIYKEM KERFKDYLWI DAVSKCDLLG GSPVMYAKED RSSDDAEIIK 401: YRERGPDESI HVSVKTEQGL NELKNKVKEV LSSEMEKIQS GEKTDQSVAT C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)