AT1G80680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SUPPRESSOR OF AUXIN RESISTANCE 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSOR OF AUXIN RESISTANCE 3 (SAR3); FUNCTIONS IN: porin activity; INVOLVED IN: mRNA export from nucleus, defense response signaling pathway, resistance gene-dependent, response to auxin stimulus, negative regulation of flower development, developmental process; LOCATED IN: nuclear membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230), Nuclear protein 96 (InterPro:IPR021967); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 653 Blast hits to 526 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 224; Plants - 93; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30324219..30328489 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119161.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1046 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTSLSIQPFP EISRMARDLD SRKKRRISLD GIAALCEHSK EIIDSLPMLN SPDYFLKPCI NELVEREIES PDYCSRVPDF TIGRIGYGYI RFLGNTDVRR 0101: LDLDHIVKFH RHEVIVYDDE SSKPVVGEGL NKAAEVTLVV NIPDLTWGKQ QVNHIAYKLK QSTERQGATF ISFDPDNGLW KFFVPHFSRF GLSDDEAEDI 0201: AMDDAPGLGD PVGLDGKKVA DIDEEDQMET SELELSHSLP AHLGLDPEKM KEMRMLMFPN EDEDESEDFR EQTSHLMTSL TKRNVRPSQK IAQRNSHQDP 0301: PPVVRKTPLA LLEYNPGNDK SSPGSILMVQ QNKNLAVRKS KTGGFELDIS HVTPLTDNYS RNVVDAALFM GRSFRAGWGP NGVLFHTGKP ICSSSSQMVL 0401: SSVINKEKIA IDKVVWDRKG KVQKELIDSA FEAPLSLHKE LNHVEEEVRF GSFSLKLQNV VTDRVVLSDI CRSYIGIIEK QLEVAGLSTS AKLFLMHQVM 0501: VWELIKVLFS ERQSTERLMY AASDNEEDVM QDVKEDSAKI DTEALPLIRR AEFSCWLQES VSHRVQEDVS DLNGSSYLEH LFFLLTGREL DSAVELAISK 0601: GDVRLACLLS QAGGSTVNRN DILQQLHLWR RNGLDFNFIE KERIKLYELL AGNIHDALQD FTIDWKRFLG LLMWHHLPPD SSLPIIFRSY QLLLNQAKAP 0701: WPVPIYIDEG PADGFVSDNK HSDILYYLML LHSKEEEEFG FLQTMFSAFS STDDPLDYHM IWHHRGILEA VGAFTSDDLH TLDMGFVAQL LSQGLCHWAI 0801: YVVLHIPFRE DHPYLHVTVI REILFQYCET WSSMESQRQF IKDLGIPSEW MHEALAVYYN YHGDFVKALD QFIECANWQR AHSIFMTSVA HSLFLSANHS 0901: EIWRIATSMD DRKSEIENWD LGAGIYMSFY LLKSSLQEDA DTMVELEPLD STNESCRNFV GRLNESLAVW GDRLPVEARV AYSKMAEEIC DLLLSDLSKN 1001: PSRETQLTCF ETAFDAPLPE DVRSTHLQDA VSLFSLYLSE TGQISA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)