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AT1G80670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21189294 (2010): nucleus nuclear envelope
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G15850.1); Has 28564 Blast hits to 16034 proteins in 648 species: Archae - 58; Bacteria - 6462; Metazoa - 9394; Fungi - 6178; Plants - 3041; Viruses - 0; Other Eukaryotes - 3431 (source: NCBI BLink).
Protein Annotations
BioGrid:29624eggNOG:ENOG410XQ1MeggNOG:KOG0647EMBL:AC011713EMBL:AY087683EMBL:BT025241EMBL:CP002684
EMBL:U53501EnsemblPlants:AT1G80670EnsemblPlants:AT1G80670.1entrez:844406Gene3D:2.130.10.10GeneID:844406Genevisible:Q38942
GO:GO:0005635GO:GO:0005643GO:GO:0005829GO:GO:0015031GO:GO:0051028GO:GO:0080008Gramene:AT1G80670.1
hmmpanther:PTHR10971hmmpanther:PTHR10971:SF16HOGENOM:HOG000208823InParanoid:Q38942IntAct:Q38942InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR020472KEGG:ath:AT1G80670KO:K14298OMA:KGHEYYNPaxDb:Q38942Pfam:PF00400
Pfam:Q38942Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q38942PIR:A96839PIR:S71241PRIDE:Q38942
PRINTS:PR00320PRO:PR:Q38942PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q38942Proteomes:UP000006548RefSeq:NP_178182.1
SMART:SM00320SMR:Q38942STRING:3702.AT1G80670.1SUPFAM:SSF50978TAIR:AT1G80670UniGene:At.24472UniProt:Q38942
Coordinates (TAIR10) chr1:-:30320809..30323543
Molecular Weight (calculated) 38269.90 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.46
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)