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AT1G80580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18560.1); Has 5731 Blast hits to 5495 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5710; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioGrid:29615eggNOG:ENOG410J0D8eggNOG:ENOG410YYNQEMBL:AC018849EMBL:AY560844EMBL:BT026038EMBL:CP002684
EMBL:DQ446446EnsemblPlants:AT1G80580EnsemblPlants:AT1G80580.1entrez:844397Gene3D:3.30.730.10GeneID:844397Genevisible:Q9M8M5
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G80580.1hmmpanther:PTHR31677
hmmpanther:PTHR31677:SF3HOGENOM:HOG000090320InParanoid:Q9M8M5InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G80580ncoils:Coil
OMA:KETPLVCPaxDb:Q9M8M5Pfam:PF00847Pfam:Q9M8M5Pfscan:PS51032PhylomeDB:Q9M8M5PIR:H96837
PRIDE:Q9M8M5PRINTS:PR00367PRO:PR:Q9M8M5PROSITE:PS51032ProteinModelPortal:Q9M8M5Proteomes:UP000006548RefSeq:NP_178173.1
SMART:SM00380SMR:Q9M8M5SUPFAM:SSF54171TAIR:AT1G80580UniGene:At.50665UniProt:Q9M8M5
Coordinates (TAIR10) chr1:+:30293558..30294328
Molecular Weight (calculated) 28828.50 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.66
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSYTVDGH RLQYSVPLSS MHETSQNSET YGLSKESPLV CMPLFETNTT SFDISSLFSF NPKPEPENTH RVMDDSIAAV VGENVLFGDK NKVSDHLTKE
101: GGVKRGRKMP QKTGGFMGVR KRPWGRWSAE IRDRIGRCRH WLGTFDTAEE AARAYDAAAR RLRGTKAKTN FVIPPLFPKE IAQAQEDNRM RQKQKKKKKK
201: KVSVRKCVKV TSVAQLFDDA NFINSSSIKG NVISSIDNLE KMGLELDLSL GLLSRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)