suba logo
AT1G80480.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid transcriptionally active 17 (PTAC17); LOCATED IN: plastid chromosome, chloroplast stroma, chloroplast, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 22612 Blast hits to 14499 proteins in 1972 species: Archae - 190; Bacteria - 10146; Metazoa - 2946; Fungi - 801; Plants - 655; Viruses - 16; Other Eukaryotes - 7858 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0523eggNOG:KOG2743EMBL:AC018849EMBL:BT014948EMBL:BT015396EMBL:CP002684EnsemblPlants:AT1G80480
EnsemblPlants:AT1G80480.1entrez:844387Gene3D:3.30.1220.10Gene3D:3.40.50.300GeneID:844387GO:GO:0009295GO:GO:0009507
GO:GO:0009508GO:GO:0009570Gramene:AT1G80480.1hmmpanther:PTHR13748hmmpanther:PTHR13748:SF43HOGENOM:HOG000182211IntAct:Q9M8L6
InterPro:IPR003495InterPro:IPR011629InterPro:IPR027417KEGG:ath:AT1G80480OMA:KHIWQHWPfam:PF02492Pfam:PF07683
PhylomeDB:Q9M8L6PIR:F96836Proteomes:UP000006548RefSeq:NP_178163.1SMART:SM00833SMR:Q9M8L6STRING:3702.AT1G80480.1
SUPFAM:0041413SUPFAM:SSF52540SUPFAM:SSF90002TAIR:AT1G80480tair10-symbols:PTAC17UniGene:At.33893UniProt:Q9M8L6
Coordinates (TAIR10) chr1:-:30258272..30260570
Molecular Weight (calculated) 49490.40 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.33
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)