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AT1G80410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.698
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2753 (EMB2753); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), N-terminal acetyltransferase A, auxiliary subunit (InterPro:IPR021183); Has 4153 Blast hits to 3182 proteins in 554 species: Archae - 484; Bacteria - 1303; Metazoa - 580; Fungi - 247; Plants - 139; Viruses - 3; Other Eukaryotes - 1397 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1880-MONOMERBioCyc:ARA:GQT-1881-MONOMEReggNOG:ENOG410XR7DeggNOG:KOG1156EMBL:AK118131EMBL:AY064015EMBL:AY091419
EMBL:CP002684EnsemblPlants:AT1G80410EnsemblPlants:AT1G80410.1entrez:844381ExpressionAtlas:Q8VZM1Gene3D:1.25.40.10GeneID:844381
GO:GO:0016740Gramene:AT1G80410.1hmmpanther:PTHR22767hmmpanther:PTHR22767:SF2HOGENOM:HOG000191711IntAct:Q8VZM1InterPro:IPR001440
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR021183ncoils:CoilPfam:PF00515Pfam:PF12569
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q8VZM1PIRSF:PIRSF000422PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548
RefSeq:NP_178157.2SMART:SM00028SMR:Q8VZM1STRING:3702.AT1G80410.2SUPFAM:SSF48452TAIR:AT1G80410tair10-symbols:EMB2753
UniGene:At.19651UniGene:At.48403UniProt:Q8VZM1
Coordinates (TAIR10) chr1:-:30227963..30234832
Molecular Weight (calculated) 102152.00 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.54
Length 897 amino acids
Sequence (TAIR10)
(BLAST)
001: MGASLPPKEA NLFKLIVKSY ETKQYKKGLK AADAILKKFP DHGETLSMKG LTLNCMDRKT EAYELVRLGV KNDIKSHVCW HVLGLLYRSD REYREAIKCY
101: RNALRIDPDN LEILRDLSLL QAQMRDLSGF VETRQQLLTL KPNHRMNWIG FAVSQHLNAN ASKAVEILEA YEGTLEDDYP PENELIEHTE MILYKVSLLE
201: ESGSFDKALE ELHKKEPKIV DKLSYKEQEV SLLSKVGRLE EANKLYRVLL SMNPDNYRYH EGLQKCLGLY SESGQYSSDQ IEKLNALYQS LSEQYTRSSA
301: VKRIPLDFLQ DENFKEAVAK YIKPLLTKGV PSLFSDLSSL YDHPRKPDIL EQLVVEMKHS IGTTGSFPGS DVKEPPSTLL WTLFFLAQHY DRRGQYDVAL
401: CKIDEAIAHT PTVIDLYSVK SRIMKHAGDL TAAAALADEA RGMDLADRYI NSECVKRMLQ ADQVPLAEKT AVLFTKEGDQ LNNLHDMQCM WYDLASGDSY
501: FRQGDLGRAL KKFLAVEKHY ADISEDQFDF HSYCLRKMTL RSYVDMLKFQ DRLHSFPYFH KAAIRAIRCY LKLHDSPKST AGEDEMSKLA PAQKKKIKKQ
601: KKAEARAKKE AESKSEESTA SGASKSGKRN VKPVDPDPHG QKLIQVEEPM AEASKYLRLL QKHSPNSLET HLLSFEVNMR KQKFLLAFQA VKQLLKLGAE
701: NPDSHRSLVK FFLMTESISA PTTEAEKLRW RVLEAERPSI SQLQNKSLME ANKEFLGRHE DSLVHRAAYA EMLYILDPSK KTEAIKIIED STNKVVQTNE
801: ALGQAREWKL KDCIAVHTLL DTVLLDSQAA SRWKSRCAEY FPCSTHFEGK HCSLMPDSVY NSSRKSNENG DTPNHPMGQT ELSDGQLEAF KSLSVAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)