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AT1G80390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 15
Curator
Summary (TAIR10)
Member of a multigene family of Auxin responsive genes.
Computational
Description (TAIR10)
indole-3-acetic acid inducible 15 (IAA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1649 Blast hits to 1649 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29597eggNOG:ENOG410JVAJeggNOG:ENOG411062ZEMBL:AC018848EMBL:AJ441300EMBL:CP002684EnsemblPlants:AT1G80390
EnsemblPlants:AT1G80390.1entrez:844379GeneID:844379GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009733GO:GO:0009734Gramene:AT1G80390.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF34HOGENOM:HOG000238261InParanoid:Q9C966
IntAct:Q9C966InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT1G80390KO:K14484OMA:WMMFVES
PANTHER:PTHR31734PaxDb:Q9C966Pfam:PF02309Pfam:Q9C966Pfscan:PS51745PhylomeDB:Q9C966PIR:F96835
PIR:S58502PRIDE:Q9C966PRO:PR:Q9C966PROSITE:PS51745ProteinModelPortal:Q9C966Proteomes:UP000006548RefSeq:NP_178155.1
SMR:Q9C966STRING:3702.AT1G80390.1SUPFAM:SSF54277TAIR:AT1G80390tair10-symbols:IAA15UniGene:At.33908UniProt:Q9C966
Coordinates (TAIR10) chr1:-:30221780..30222702
Molecular Weight (calculated) 20070.30 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.27
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPEEYVRVW PDSGDLGGTE LTLALPGTPT NASEGPKKFG NKRRFLETVD LKLGEAHENN YISSMVTNDQ LVGWPPVATA RKTVRRKYVK VALDGAAYLR
101: KVDLGMYDCY GQLFTALENM FQGIITICRV TELERKGEFV ATYEDKDGDL MLVGDVPWMM FVESCKRMRL MKTGDAIGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)