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AT1G80350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.
Computational
Description (TAIR10)
ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: trichome branching, cortical microtubule organization, multidimensional cell growth, plant-type cell wall biogenesis, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G34560.1); Has 31677 Blast hits to 29370 proteins in 3124 species: Archae - 1478; Bacteria - 12054; Metazoa - 4742; Fungi - 3292; Plants - 2928; Viruses - 23; Other Eukaryotes - 7160 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G80350-MONOMERBioGrid:29593BRENDA:3.6.4.3EC:3.6.4.3eggNOG:ENOG410XPN7eggNOG:KOG0738EMBL:AB044785
EMBL:AC018848EMBL:AF048706EMBL:AF358779EMBL:AF359248EMBL:AK228515EMBL:AY059919EMBL:BT000149
EMBL:CP002684EnsemblPlants:AT1G80350EnsemblPlants:AT1G80350.1entrez:844375ExpressionAtlas:Q9SEX2Gene3D:3.40.50.300GeneID:844375
Genevisible:Q9SEX2GO:GO:0000226GO:GO:0005524GO:GO:0005737GO:GO:0005874GO:GO:0008568GO:GO:0009825
GO:GO:0009832GO:GO:0010091GO:GO:0043622GO:GO:0051013Gramene:AT1G80350.1HAMAP:MF_03023hmmpanther:PTHR23074
hmmpanther:PTHR23074:SF19HOGENOM:HOG000225142InParanoid:Q9SEX2IntAct:Q9SEX2InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960
InterPro:IPR015415InterPro:IPR027417InterPro:IPR028596iPTMnet:Q9SEX2KEGG:ath:AT1G80350KO:K07767OMA:ALKVKWQ
PaxDb:Q9SEX2Pfam:PF00004Pfam:PF09336Pfam:Q9SEX2PhylomeDB:Q9SEX2PIR:B96835PRIDE:Q0WR11
PRIDE:Q9SEX2PRO:PR:Q9SEX2PROSITE:PS00674ProteinModelPortal:Q9SEX2Proteomes:UP000006548RefSeq:NP_178151.1scanprosite:PS00674
SMART:SM00382SMR:Q9SEX2STRING:3702.AT1G80350.1SUPFAM:SSF52540TAIR:AT1G80350tair10-symbols:AAA1tair10-symbols:ATKTN1
tair10-symbols:BOT1tair10-symbols:ERH3tair10-symbols:FRA2tair10-symbols:FRC2tair10-symbols:FTRtair10-symbols:KTN1tair10-symbols:LUE1
UniGene:At.11879UniProt:Q0WR11UniProt:Q9SEX2
Coordinates (TAIR10) chr1:-:30205499..30208050
Molecular Weight (calculated) 57239.40 Da
IEP (calculated) 7.41
GRAVY (calculated) -0.59
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)