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AT1G80270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.500
mitochondrion 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PENTATRICOPEPTIDE REPEAT 596
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
Protein Annotations
BioGrid:29585eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC018848EMBL:AK221194EMBL:AY062525EMBL:AY093307
EMBL:CP002684EnsemblPlants:AT1G80270EnsemblPlants:AT1G80270.1EnsemblPlants:AT1G80270.2EnsemblPlants:AT1G80270.3entrez:844367Gene3D:1.25.40.10
GeneID:844367Genevisible:Q9C977GO:GO:0005739GO:GO:0009941Gramene:AT1G80270.1Gramene:AT1G80270.2Gramene:AT1G80270.3
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF26HOGENOM:HOG000237774InParanoid:Q9C977IntAct:Q9C977InterPro:IPR002885InterPro:IPR011990
iPTMnet:Q9C977KEGG:ath:AT1G80270ncoils:CoilOMA:NKIKPMYPaxDb:Q9C977Pfam:PF01535Pfam:PF13812
Pfam:Q9C977Pfscan:PS51375PhylomeDB:Q9C977PIR:B96834PRIDE:Q9C977PRO:PR:Q9C977PROSITE:PS51375
ProteinModelPortal:Q9C977Proteomes:UP000006548RefSeq:NP_001077853.1RefSeq:NP_178143.1RefSeq:NP_974190.1SMR:Q9C977STRING:3702.AT1G80270.1
TAIR:AT1G80270tair10-symbols:PPR596TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.72982UniProt:Q9C977
Coordinates (TAIR10) chr1:+:30181265..30183331
Molecular Weight (calculated) 67285.90 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.49
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)