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AT1G80180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15400.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2PReggNOG:ENOG410ZGQ8EMBL:AC009322EMBL:AY039872EMBL:AY077663EMBL:AY087473EMBL:CP002684
EnsemblPlants:AT1G80180EnsemblPlants:AT1G80180.1entrez:844358GeneID:844358GO:GO:0005886GO:GO:0010375GO:GO:0016301
Gramene:AT1G80180.1hmmpanther:PTHR33730hmmpanther:PTHR33730:SF4HOGENOM:HOG000237561InterPro:IPR031421KEGG:ath:AT1G80180OMA:HHRNTGR
Pfam:PF15697PhylomeDB:Q9SSC1PIR:E96833PRO:PR:Q9SSC1ProMEX:Q9SSC1Proteomes:UP000006548RefSeq:NP_565233.1
STRING:3702.AT1G80180.1TAIR:AT1G80180UniGene:At.11611UniGene:At.75141UniProt:Q9SSC1
Coordinates (TAIR10) chr1:-:30157057..30157473
Molecular Weight (calculated) 15106.90 Da
IEP (calculated) 11.67
GRAVY (calculated) -1.01
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLQRSTIS FRRQGSSGIV WDDRLIAELS QQAANDRKGE TLQQDEQAKL ITSEVQDQTT KPIAGEGLKP IRTDGGMERS RSNGGGAIRH HRNTGRVSPA
101: VDPPSPRLSA FGCCSAFGKK QPGKKVNQRK RPAKRRSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)