AT1G80140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 3888 Blast hits to 3869 proteins in 461 species: Archae - 6; Bacteria - 1036; Metazoa - 13; Fungi - 1239; Plants - 1472; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30146611..30148180 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36047.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF IIDGEMIAQS DPQKWGNGEN GVIPWLIFDQ VDGLAIVGRG LLDGQGKSWW DIHCRDHPGP MMTFSNCGNV 101: TLKSLRFRNS AQTHVLVMGS QNVYIDDIKI TSPEASPNTD GIHITSSTAV SINHSDIATG DDCVSIGDQV NNLNVTFMNC GPGHGVSIGS LGRGGTEVTV 201: ENIRVSHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS SVQNPIIIDQ FYGCAPTCVE TMKGVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNLF 301: MRDIDLSPAD GIDSVSSLCS FAHGSAQGII RPLSCF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)