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AT1G80130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1VJeggNOG:ENOG410YSIREMBL:AC009322EMBL:AY034991EMBL:AY063018EMBL:AY087456EMBL:CP002684
EnsemblPlants:AT1G80130EnsemblPlants:AT1G80130.1entrez:844353Gene3D:1.25.40.10GeneID:844353GO:GO:0006979GO:GO:0016020
Gramene:AT1G80130.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF75HOGENOM:HOG000029161InterPro:IPR011990KEGG:ath:AT1G80130OMA:QHTSITA
PhylomeDB:Q9SSC6PIR:H96832Proteomes:UP000006548RefSeq:NP_565230.1SMR:Q9SSC6STRING:3702.AT1G80130.1SUPFAM:SSF48452
TAIR:AT1G80130UniGene:At.23459UniProt:Q9SSC6
Coordinates (TAIR10) chr1:-:30141250..30142478
Molecular Weight (calculated) 33596.50 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.83
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)