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AT1G80120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Protein of unknown function (DUF567)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT3G15810.1); Has 439 Blast hits to 438 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:844352eggNOG:ENOG410IUDKeggNOG:ENOG410YKW3EMBL:AC009322EMBL:BT004042EMBL:BT005160EMBL:CP002684
EnsemblPlants:AT1G80120EnsemblPlants:AT1G80120.1entrez:844352GeneID:844352Gramene:AT1G80120.1hmmpanther:PTHR31087hmmpanther:PTHR31087:SF2
HOGENOM:HOG000238319InParanoid:Q9SSC7IntAct:Q9SSC7InterPro:IPR007612InterPro:IPR025659KEGG:ath:AT1G80120OMA:QINGDDY
PaxDb:Q9SSC7Pfam:PF04525Pfam:Q9SSC7PhylomeDB:Q9SSC7PIR:G96832PRIDE:Q9SSC7PRO:PR:Q9SSC7
ProteinModelPortal:Q9SSC7Proteomes:UP000006548RefSeq:NP_178129.1SMR:Q9SSC7STRING:3702.AT1G80120.1SUPFAM:SSF54518TAIR:AT1G80120
UniGene:At.33977UniProt:Q9SSC7
Coordinates (TAIR10) chr1:+:30139198..30139986
Molecular Weight (calculated) 23454.90 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.31
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)