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AT1G80110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.833
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phloem protein 2-B11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-B11 (PP2-B11); FUNCTIONS IN: carbohydrate binding; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B12 (TAIR:AT5G24560.1); Has 567 Blast hits to 552 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29569eggNOG:ENOG410JNPMeggNOG:ENOG4111C7TEMBL:AC009322EMBL:AY050918EMBL:BT014882EMBL:CP002684
EnsemblPlants:AT1G80110EnsemblPlants:AT1G80110.1entrez:844351GeneID:844351Genevisible:Q949S5GO:GO:0005634GO:GO:0016567
GO:GO:0030246Gramene:AT1G80110.1hmmpanther:PTHR32278hmmpanther:PTHR32278:SF6HOGENOM:HOG000239607InParanoid:Q949S5IntAct:Q949S5
InterPro:IPR001810InterPro:IPR025886iPTMnet:Q949S5KEGG:ath:AT1G80110OMA:CYMMAARPaxDb:Q949S5Pfam:PF00646
Pfam:PF14299Pfam:Q949S5Pfscan:PS50181PhylomeDB:Q949S5PIR:F96832PRIDE:Q949S5PRO:PR:Q949S5
PROSITE:PS50181ProteinModelPortal:Q949S5Proteomes:UP000006548RefSeq:NP_565229.4SMART:SM00256STRING:3702.AT1G80110.1SUPFAM:SSF81383
TAIR:AT1G80110tair10-symbols:ATPP2-B11tair10-symbols:PP2-B11UniGene:At.26547UniPathway:UPA00143UniProt:Q949S5
Coordinates (TAIR10) chr1:+:30135466..30136767
Molecular Weight (calculated) 28985.80 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.10
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNLPEDCIA KILSLTTPLD VCRLSAVSSI FRSAAGSDDV WNHFLPADFP AGFAAPAGLP TRKQLFFSLV DNPLLINGTL LSFSLERKSG NKCYMMAARA
101: LNIVWGHEQR YWHWISLPNT RFGEVAELIM VWWLEITGKI NITLLSDDTL YAAYFVFKWN HSPYGFRQPV ETSLVLADTE STDNVVQPSM ISLMQDSGGE
201: EGQSPVLRRD GWYEVELGQF FKRRGDLGEI EMSLKETKGP YEKKGLIVYG IEIRPVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)