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AT1G80090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.673
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G15330.1); Has 517 Blast hits to 517 proteins in 144 species: Archae - 0; Bacteria - 47; Metazoa - 83; Fungi - 146; Plants - 195; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQN5eggNOG:ENOG410ZD2CEMBL:AC009322EMBL:AK118213
EMBL:CP002684EnsemblPlants:AT1G80090EnsemblPlants:AT1G80090.1entrez:844349
GeneID:844349Genevisible:Q8GXI9GO:GO:0009553GO:GO:0048443
Gramene:AT1G80090.1hmmpanther:PTHR13780hmmpanther:PTHR13780:SF51HOGENOM:HOG000238797
InParanoid:Q8GXI9InterPro:IPR000644KEGG:ath:AT1G80090PaxDb:Q8GXI9
Pfam:PF00571Pfam:Q8GXI9Pfscan:PS51371PhylomeDB:Q8GXI9
PIR:D96832PRO:PR:Q8GXI9PROSITE:PS51371ProteinModelPortal:Q8GXI9
Proteomes:UP000006548RefSeq:NP_178126.1SMART:SM00116STRING:3702.AT1G80090.1
SUPFAM:SSF54631TAIR:AT1G80090UniGene:At.33984UniProt:Q8GXI9
Coordinates (TAIR10) chr1:+:30130104..30131855
Molecular Weight (calculated) 43787.50 Da
IEP (calculated) 7.38
GRAVY (calculated) 0.11
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MTYMNNEVTT KASKQRLEVH KPRPIFFETL TITQIQIFMQ SYSRLMQFKV KDLMIDKRRL VEVPDNATLG DALNTMTILG IKPVANRVRA VPVAAKPGQW
101: LGAGGSMIVE LDKQSGSARK QYIGMVTMLD VVAHIAGDDG ESGLDKKMAA PVSSIIGHCP EGLSLWSLNP NTSIMDCMEM LSKGIHRVLV PLDSNTENIT
201: GPELVESASA YAMLSQMDLI SFFFDQSSQL HGILSHTVTD LSAIHNTVLA LTSQARVKDA IQCMSIAMLN AVPIVEASGE GEDHKQLVDG KNRRVVGTFS
301: ASDLKGCHLA TLRSWLPLNA LEFVEKIPRT LLFTAATSTP GRELVTCHVT STLAQVIHMV TTKRVHRVWV VDQNGGLQGL VSLTDIIAVV RSALLSGAPD
401: LF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)