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AT1G80080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.
Computational
Description (TAIR10)
TOO MANY MOUTHS (TMM); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 29 (TAIR:AT2G42800.1); Has 88991 Blast hits to 28047 proteins in 1079 species: Archae - 16; Bacteria - 3330; Metazoa - 23111; Fungi - 805; Plants - 56845; Viruses - 0; Other Eukaryotes - 4884 (source: NCBI BLink).
Protein Annotations
BioGrid:29566eggNOG:COG4886eggNOG:KOG0619EMBL:AC009322
EMBL:AK118563EMBL:BT005892EMBL:CP002684EnsemblPlants:AT1G80080
EnsemblPlants:AT1G80080.1entrez:844348Gene3D:3.80.10.10GeneID:844348
Genevisible:Q9SSD1GO:GO:0004872GO:GO:0005886GO:GO:0008356
GO:GO:0009737GO:GO:0016020GO:GO:0016021GO:GO:0031225
GO:GO:0042277Gramene:AT1G80080.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF210
HOGENOM:HOG000238086InParanoid:Q9SSD1IntAct:Q9SSD1InterPro:IPR001611
InterPro:IPR003591InterPro:IPR032675KEGG:ath:AT1G80080MINT:MINT-8059500
OMA:VYDIMRAPaxDb:Q9SSD1Pfam:PF13855Pfam:Q9SSD1
PhylomeDB:Q9SSD1PIR:C96832PRIDE:Q9SSD1PRO:PR:Q9SSD1
ProteinModelPortal:Q9SSD1Proteomes:UP000006548RefSeq:NP_178125.1SMART:SM00369
SMR:Q9SSD1STRING:3702.AT1G80080.1SUPFAM:SSF52058TAIR:AT1G80080
tair10-symbols:AtRLP17tair10-symbols:TMMTMHMM:TMhelixUniGene:At.33989
UniProt:Q9SSD1
Coordinates (TAIR10) chr1:-:30128073..30129563
Molecular Weight (calculated) 54508.40 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.10
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV
101: VSLSFGALSD DTAFPTCDPQ RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG NLTNLKVLDL HKNHLNGSIP
201: LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL
301: NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR
401: MRRKLRLYNN AGLCVNRDSD LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS AFFLVFPNFI FMLISS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)