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AT1G80030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Molecular chaperone Hsp40/DnaJ family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Molecular chaperone Hsp40/DnaJ family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT3G17830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0715EMBL:AK229599EMBL:CP002684
EnsemblPlants:AT1G80030EnsemblPlants:AT1G80030.1EnsemblPlants:AT1G80030.2EnsemblPlants:AT1G80030.3
entrez:844343Gene3D:1.10.287.110Gene3D:2.10.230.10GeneID:844343
GO:GO:0005524GO:GO:0006457GO:GO:0009408GO:GO:0009507
GO:GO:0009535GO:GO:0009941GO:GO:0046872Gramene:AT1G80030.1
Gramene:AT1G80030.2Gramene:AT1G80030.3HAMAP:MF_01152hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF307InterPro:IPR001305InterPro:IPR001623InterPro:IPR002939
InterPro:IPR008971InterPro:IPR012724InterPro:IPR018253KEGG:ath:AT1G80030
KO:K03686OMA:ISENCRKPfam:PF00226Pfam:PF00684
Pfam:PF01556Pfscan:PS50076Pfscan:PS51188PhylomeDB:Q0WN54
PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076PROSITE:PS51188
Proteomes:UP000006548RefSeq:NP_565227.1RefSeq:NP_849910.1RefSeq:NP_849911.1
scanprosite:PS00636SMART:SM00271SMR:Q0WN54STRING:3702.AT1G80030.1
SUPFAM:SSF46565SUPFAM:SSF49493SUPFAM:SSF57938SwissPalm:Q0WN54
TAIR:AT1G80030TIGRfam:TIGR02349TIGRFAMs:TIGR02349UniGene:At.23752
UniProt:Q0WN54
Coordinates (TAIR10) chr1:-:30105398..30108873
Molecular Weight (calculated) 53823.20 Da
IEP (calculated) 7.65
GRAVY (calculated) -0.47
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAGSVAN GALKWLRDNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)