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AT1G80000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CASC3/Barentsz eIF4AIII binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CASC3/Barentsz eIF4AIII binding; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G15280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVBGeggNOG:ENOG410Y9ETEMBL:AK317141EMBL:AY057486EMBL:BT004550EMBL:CP002684EnsemblPlants:AT1G80000
EnsemblPlants:AT1G80000.1EnsemblPlants:AT1G80000.2entrez:844340GeneID:844340Gramene:AT1G80000.1Gramene:AT1G80000.2hmmpanther:PTHR22814
hmmpanther:PTHR22814:SF97IntAct:Q93ZJ9InterPro:IPR018545KEGG:ath:AT1G80000OMA:PRNDIVNPfam:PF09405PhylomeDB:Q93ZJ9
Proteomes:UP000006548RefSeq:NP_565226.1RefSeq:NP_974187.1SMART:SM01044SMR:Q93ZJ9STRING:3702.AT1G80000.1TAIR:AT1G80000
UniGene:At.11614UniGene:At.71158UniProt:Q93ZJ9
Coordinates (TAIR10) chr1:+:30093195..30096742
Molecular Weight (calculated) 65696.60 Da
IEP (calculated) 5.02
GRAVY (calculated) -1.07
Length 605 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPDGVEDSD YESDPDELNR SLATRRREAS DDDEDDEEAD DHDKLRAAIQ IHSDEHSGVV VVDSDDNEGL HIEDSYGDDD DEEEDGDYGQ VDDHVEYIAD
101: NNDKTIVAGN GTDDSAATDL VDGEEQKKKE PFAVPTAGAF YMHDDRFQEL DAASNRRMRG GRRLWQSRDE RKWGHDKFEE MNTQKQQYDR RTSRGRGRGR
201: GQGRGQDRGQ SRGNNSKEFT GNGHQNQFPK AVTRGRGARR YEVALRNGNQ APSVQTKQSQ NSSVEVSHVD LGRPPTETAT LETEAIQAKK NVFASSLNSA
301: SPPFYPSRSN NNLAQKDVQA GMGRLHINEN PNPTGKKFGN TKSSSLWGRT AQTTSHGRGV PPHGQVLYQQ SPNQGDKVSS PMQIRGMPKG TDQSCTQLPG
401: QVFNQHSAVI SLLPSSPPKT GSSENPYLSG EIESAVETGA LVAKGKGSLQ PSGRGSFMYG GTQFMGPAGM AAGHGNPNFP AFLPVMQFGG QHGGVPTFGM
501: ALPGYFQPEH GTGNPEMTWL PILAGPGALG GSYCPPYTVL DGSYQADKPG LPSSAGSSSQ ENSSNNPNDE EPMERPEVTN NGNSQRSNSN PNKQPRRYSE
601: MSFSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)