suba logo
AT1G79990.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : structural molecules
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNNYeggNOG:KOG0276eggNOG:KOG4697EMBL:CP002684EnsemblPlants:AT1G79990EnsemblPlants:AT1G79990.1entrez:844339
ExpressionAtlas:F4HQE6Gene3D:2.130.10.10GeneID:844339GO:GO:0005198GO:GO:0005829GO:GO:0006886GO:GO:0016021
GO:GO:0016192GO:GO:0030117Gramene:AT1G79990.1hmmpanther:PTHR19876hmmpanther:PTHR19876:SF6InterPro:IPR001680InterPro:IPR006692
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019185InterPro:IPR020472OMA:IPAHNRVPaxDb:F4HQE6Pfam:PF00400
Pfam:PF04053Pfam:PF09801Pfscan:PS50082Pfscan:PS50294PRIDE:F4HQE6PRINTS:PR00320PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:F4HQE6Proteomes:UP000006548RefSeq:NP_178116.5SMART:SM00320SMR:F4HQE6STRING:3702.AT1G79990.1
SUPFAM:SSF50978TAIR:AT1G79990TMHMM:TMhelixUniGene:At.22078UniProt:F4HQE6
Coordinates (TAIR10) chr1:+:30084522..30091949
Molecular Weight (calculated) 128642.00 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.14
Length 1135 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFYGTAVWDP WLIVGQIICL QCSYYLTLGL FTMVFLGLRV PRLSLVYFFD YATLTTSTFT GWSVIASFLF SSLAGAVYMI FLVERARKCL DFSATLYIIH
0101: LFFCIMYGGW PSSMAWWVVN GTGLAVMALL AEYLCIKREQ REIPMDRFHS NPDSDPNRQR ALEVGSPPLR FFFFVISDPP CDQGPFPSII RSPVQTFVWT
0201: CKDVYVRVFL IALKFDPLRL EIKRKFAQRS ERVKSVDLHP TEPWILASLY SGTLCIWNYQ TQTMVKSFDV TELPVRSAKF IARKQWVVAG ADDMFIRVYN
0301: YNTMDKIKVF EAHADYIRCV AVHPTLPYVL SSSDDMLIKL WDWEKGWLCT QIFEGHSHYV MQVTFNPKDT NTFASASLDR TIKIWNLGSP DPNFTLDAHL
0401: KGVNCVDYFT GGDKPYLITG SDDHTAKVWD YQTKSCVQTL EGHTHNVSAV SFHPELPIII TGSEDGTVRI WHATTYRLEN TLNYGLERVW AIGHIKGSRR
0501: VVIGYDEGSI MVKLGREIPV ASMDNSGKII WAKHNEIHTV NIKSVGADEV TDGERLPLAV KELGTCDLYP QSLKHNPNGR FVVVCGDGEY IIYTALAWRN
0601: RSFGSALEFV WSSDGEHAVR ESSTKIKIFS KNFQEKKTVR PTFSAEHIFG GTLLTMCSSD FICFYDWAEC RLIRRIDVTV KNLYWADSGD LVAIASDTSF
0701: YILKFNRDIV SSYFDGGKQI DEEGIEDAFE LLNETNERVR TGLWVGDCFI YTNSSWRLNY CVGGEVTTMY HLDRPMYLLG YLANQSRVYL IDKEFNVIGY
0801: TLLLSLIEYK TLVMRGDLEQ ANEVLPSIPK EHHNSVAHFL ESRGMTEDAL EVATDPDYRF ELAIQLGRLA VAKDIAVEAQ NESKWKQLGE LAMSSGKLDM
0901: AEECMRHAMD LSGLLLLYSS LGDADGMMKL AALAKEQGKN NVAFLCLFML GQVEDCLHLL VESNRIPEAA LMARSYLPSK VSEIVALWRN DLTKISPKAA
1001: ESLADPEEYP NLFEEWQVAL SLENRAAETR GVHPPAGDYC SHADRDHTTL VDAFRIMQIE EEGRLEQGDV LDEVGEEGED GEEEEEEDRQ EESSDGRQQN
1101: VEEEAVVVDA DSTDGAVLVN GNESEEQWVL TPPQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)