AT1G79990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural molecules | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30084522..30091949 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128642.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1135 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFYGTAVWDP WLIVGQIICL QCSYYLTLGL FTMVFLGLRV PRLSLVYFFD YATLTTSTFT GWSVIASFLF SSLAGAVYMI FLVERARKCL DFSATLYIIH 0101: LFFCIMYGGW PSSMAWWVVN GTGLAVMALL AEYLCIKREQ REIPMDRFHS NPDSDPNRQR ALEVGSPPLR FFFFVISDPP CDQGPFPSII RSPVQTFVWT 0201: CKDVYVRVFL IALKFDPLRL EIKRKFAQRS ERVKSVDLHP TEPWILASLY SGTLCIWNYQ TQTMVKSFDV TELPVRSAKF IARKQWVVAG ADDMFIRVYN 0301: YNTMDKIKVF EAHADYIRCV AVHPTLPYVL SSSDDMLIKL WDWEKGWLCT QIFEGHSHYV MQVTFNPKDT NTFASASLDR TIKIWNLGSP DPNFTLDAHL 0401: KGVNCVDYFT GGDKPYLITG SDDHTAKVWD YQTKSCVQTL EGHTHNVSAV SFHPELPIII TGSEDGTVRI WHATTYRLEN TLNYGLERVW AIGHIKGSRR 0501: VVIGYDEGSI MVKLGREIPV ASMDNSGKII WAKHNEIHTV NIKSVGADEV TDGERLPLAV KELGTCDLYP QSLKHNPNGR FVVVCGDGEY IIYTALAWRN 0601: RSFGSALEFV WSSDGEHAVR ESSTKIKIFS KNFQEKKTVR PTFSAEHIFG GTLLTMCSSD FICFYDWAEC RLIRRIDVTV KNLYWADSGD LVAIASDTSF 0701: YILKFNRDIV SSYFDGGKQI DEEGIEDAFE LLNETNERVR TGLWVGDCFI YTNSSWRLNY CVGGEVTTMY HLDRPMYLLG YLANQSRVYL IDKEFNVIGY 0801: TLLLSLIEYK TLVMRGDLEQ ANEVLPSIPK EHHNSVAHFL ESRGMTEDAL EVATDPDYRF ELAIQLGRLA VAKDIAVEAQ NESKWKQLGE LAMSSGKLDM 0901: AEECMRHAMD LSGLLLLYSS LGDADGMMKL AALAKEQGKN NVAFLCLFML GQVEDCLHLL VESNRIPEAA LMARSYLPSK VSEIVALWRN DLTKISPKAA 1001: ESLADPEEYP NLFEEWQVAL SLENRAAETR GVHPPAGDYC SHADRDHTTL VDAFRIMQIE EEGRLEQGDV LDEVGEEGED GEEEEEEDRQ EESSDGRQQN 1101: VEEEAVVVDA DSTDGAVLVN GNESEEQWVL TPPQE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)