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AT1G79950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAD3-like DNA-binding helicase protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1199eggNOG:KOG1132EMBL:CP002684EnsemblPlants:AT1G79950EnsemblPlants:AT1G79950.1entrez:844335Gene3D:1.20.1160.11
Gene3D:3.40.50.300GeneID:844335GO:GO:0000723GO:GO:0000725GO:GO:0003677GO:GO:0004003GO:GO:0005524
GO:GO:0005634GO:GO:0005739GO:GO:0006355GO:GO:0045910GO:GO:0048364Gramene:AT1G79950.1hmmpanther:PTHR11472
hmmpanther:PTHR11472:SF34InParanoid:F4HQE2InterPro:IPR003822InterPro:IPR006554InterPro:IPR006555InterPro:IPR010614InterPro:IPR013020
InterPro:IPR014001InterPro:IPR014013InterPro:IPR027417iPTMnet:F4HQE2KEGG:ath:AT1G79950KO:K11136OMA:GRANNWG
PaxDb:F4HQE2Pfam:PF06733Pfam:PF13307Pfscan:PS51193PRIDE:F4HQE2PROSITE:PS51193ProteinModelPortal:F4HQE2
Proteomes:UP000006548RefSeq:NP_178113.3SMART:SM00487SMART:SM00488SMART:SM00491SMR:F4HQE2STRING:3702.AT1G79950.1
SUPFAM:SSF47762SUPFAM:SSF52540TAIR:AT1G79950TIGRfam:TIGR00604TIGRFAMs:TIGR00604UniGene:At.34013UniProt:F4HQE2
Coordinates (TAIR10) chr1:+:30073580..30079537
Molecular Weight (calculated) 116638.00 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.36
Length 1040 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGFTVVSRSG SPTRRENQKR RVCFRLLLRL LRRGFVVLSA ESDPKMPNYS IRGINVEFPF EAYQSQIIYM DRVIESLQNK CHALLESPTG TGKTLCLLCA
0101: TLAWRKSLGS FSTRKDRKNS AIPWSDSDEP LSQSGGGGGG AFPTIVYASR THSQLRQVIK ELKRSSYRPK MVVLGSREQL CVNEEVNSLR GKALTNACQY
0201: LCKKRGKRQC NHFNRLPDYL KHNPHIGDEP VDIEDLVNIG KDSGPCPYYI TRELHKDVDI IFAPYNYLIS NGYRKFLKVN WTNSVLIFDE AHNLESLCAD
0301: SASFDLPSVL LSACISEAQE CVQLAAARRD SLNDVSINPE NFAILKGLLL KLQELISKVP IPKRDEGFTK PGPYIYEMLK SLNITHETAP KLIGTVEEAA
0401: VFLEEEKQRT ATNAGSKLEI IADMLKLIFR ENGSNHADVY RVHVQELEQN STDVMKGKVS RTLSWWCFSP GITMLDIAQK GVGSIILTSG TLSPMDSLAQ
0501: ELKLDFPIRL ENPHVISSNQ LWAGVVSTGP SGYVLNSSYR NRDVPEYKQE LGNAIVNFSR VVPEGLLIFF PSYYLMDSCI TFWKNGCYRN SMTVWERICK
0601: LKKPVIEPKD SSLFPAAMRD FSEKLQDRAT SGVVFFAVCR GKVSEGLDFA DGAGRAVVIT GLPYARVTDP RVKLKREFLD EQSQLADVKL PRSTLLSGSM
0701: WYSQEAARAV NQAIGRVIRH RHDYGAIIFC DDRFEQPSQQ SKISLWIRPN VKCYSRYGEV ISDLARFFRT ERSNFPARLV TEQENNIVST LLPVESIEDN
0801: PTPAFGNSNL KNVGVAQNEL SRLEAFPPAN RASPLERDGN NVKRNGLTIL KHTGKIPRIV KGDVMQGCSS RKAKLVELSD DEETPVERRC EVVDLESDNC
0901: ETQTCVTEVL ASSTCLNTMG LKKKRKVPES QGSASSSVLT AKGNGGGDKK EASASAFLSQ VKEKLNTEEY KKFIGYMQAL KKKEIKLANV MQSIVQLFCG
1001: SERDHLLMGF KDFVPVKYRP AYEECIKTRK RQSIIFGNSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)