AT1G79890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RAD3-like DNA-binding helicase protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79950.1); Has 2489 Blast hits to 1811 proteins in 412 species: Archae - 187; Bacteria - 188; Metazoa - 839; Fungi - 373; Plants - 265; Viruses - 5; Other Eukaryotes - 632 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30048655..30052203 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99032.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 882 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEIREFPAF PYKPYSIQID FMNALYQFLD KGGVSMLESP TGTGKSLSII CSALQWLTDR KEKRNSGLTE ESHKVDGNDD EDEPDWMRNF TLNEADGANG 101: DKSIKNTKSP FSLRKHAKEV FTEGEKADEL NDQEFLLDEY ESQDESSPGG GNSKRKPARG FDSSSSEDEE DENDCSDDEQ GGFKVFFCSR THSQLSQFVK 201: ELRKTVFAKK LKVVCLGSRK NLCINEDVLK LGNVTRINER CLDLQKKKIS QVSKKKNLGA NVRIVRTKAS CRCPMLRKHK LQREFKAESF QQEAMDIEDL 301: VQLGREMRTC PYYGSRRMAP AADLVILPYQ SLLSKSSRES LGLSLKNSVV IIDEAHNLAD TLLSMHDAKL TVSQLEDIHC SIESYLGRFQ NLLGAGNRRY 401: IQIMLILTRA FLKPLASDRN LSSVNVGLDT ENPSKSKPCG ACSMAIYDFL FSLNIDNINL VKLLAYIKES NIIHKVSGYG ERVAAMLQKD PVAHEEMSKL 501: TSFRAFSDML VALTNNNGDG RIIISRTSSS TSGQHGGYIK YVMLTGAKLF SEVVDEAHAV ILAGGTLQPI EETRERLFPW LPSNQLQFFS CSHIVPPESI 601: MPIAVSHGPS GQSFDFSHSS RSSIGMIQEL GLLMSNLVAV VPEGIIVFFS SFEYETQVHT AWSNSGILRR IVKKKRVFRE PRKNTEVEAV LRDYKEAIES 701: ERGAIMLAVV GGKVSEGINF SDSMCRCVVM VGLPYPSPSD IELLERIKHI EGRADSDSIK PSVTLVDDSY YSGDVQAGFG VLKSCKRRGK EYYENLCMKA 801: VNQSIGRAIR HEKDYASILL VDARYSNDPS KRTSHSHPSN KLPKWIKDRL IYSTKGYGDV HRLLHQFFKH KNVENSSETN QH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)