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AT1G79880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: La protein 1 (TAIR:AT4G32720.2); Has 814 Blast hits to 814 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 413; Fungi - 147; Plants - 181; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5193eggNOG:ENOG410IQXQEMBL:AC011717EMBL:AK228183EMBL:AK319137EMBL:BT026473EMBL:CP002684
EnsemblPlants:AT1G79880EnsemblPlants:AT1G79880.1EnsemblPlants:AT1G79880.2EnsemblPlants:AT1G79880.3entrez:844327ExpressionAtlas:Q0V7U7Gene3D:1.10.10.10
Gene3D:3.30.70.330GeneID:844327Genevisible:Q0V7U7GO:GO:0000166GO:GO:0003723GO:GO:0005654GO:GO:0005730
GO:GO:0030529GO:GO:0034470hmmpanther:PTHR22792hmmpanther:PTHR22792:SF64HOGENOM:HOG000239251InParanoid:Q0V7U7InterPro:IPR000504
InterPro:IPR002344InterPro:IPR006630InterPro:IPR011991InterPro:IPR012677InterPro:IPR014886KEGG:ath:AT1G79880KO:K11090
OMA:FFSQYAKPaxDb:Q0V7U7Pfam:PF00076Pfam:PF05383Pfam:PF08777Pfam:PF14259Pfam:Q0V7U7
Pfscan:PS50102Pfscan:PS50961PhylomeDB:Q0V7U7PIR:H96829PRIDE:Q0V7U7PRINTS:PR00302PRO:PR:Q0V7U7
PROSITE:PS50102PROSITE:PS50961ProteinModelPortal:Q0V7U7Proteomes:UP000006548RefSeq:NP_178106.2RefSeq:NP_974184.1RefSeq:NP_974185.1
SMART:SM00360SMART:SM00715SMR:Q0V7U7STRING:3702.AT1G79880.1SUPFAM:SSF46785SUPFAM:SSF54928TAIR:AT1G79880
UniGene:At.27554UniGene:At.34029UniProt:Q0V7U7
Coordinates (TAIR10) chr1:-:30046222..30048336
Molecular Weight (calculated) 44928.10 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.62
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSFNEETA KKLLTQVEFY FSDSNLPTDG FLNREVTKSK DGLVSLPLVC SFSRMRNLLG LGNINREDIP PRIVEEVANL LRTSDFLKVS NNGQRIGRGT
101: KLSKPEEVLE QVHRRTLAAS PFEYSIKMED VSSFFSQYAK VNSVRLPPNI ADKRRFCGTA LVEFSSEQDT QDILRQSLVY AGADLVLIPK SDFDCQRENM
201: IKQLGKSESH NEFRRGQIVK FALKWIASEE KVTNKEKPSA LKNKIKEKED KETGIADREK ENGDNSCASL CKDNTDQLVV PPWNNSNSVS SEVLKDLFQR
301: FGSVEHIEYS GGLDSGYVWF TDSETAMKAR AAVEFVGGLV VKNNFSVALE AINGEMEREL WKRLSSAELE GGKEGHKKEK GKDECFENVQ PTKKARKEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)