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AT1G79860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 12
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 12 (ROPGEF12); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 305 Blast hits to 303 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29543DIP:DIP-46186NeggNOG:ENOG410IH1BeggNOG:ENOG410YG86EMBL:AC011717EMBL:BT033042EMBL:CP002684
EnsemblPlants:AT1G79860EnsemblPlants:AT1G79860.1entrez:844325GeneID:844325Genevisible:Q9CA89GO:GO:0005089GO:GO:0005737
GO:GO:0005886GO:GO:0009793GO:GO:0009860GO:GO:0043547GO:GO:0080092GO:GO:0090406Gramene:AT1G79860.1
hmmpanther:PTHR33101hmmpanther:PTHR33101:SF10HOGENOM:HOG000238290InParanoid:Q9CA89InterPro:IPR005512KEGG:ath:AT1G79860ncoils:Coil
OMA:QMYKNITPaxDb:Q9CA89Pfam:PF03759Pfam:Q9CA89Pfscan:PS51334PhylomeDB:Q9CA89PIR:F96829
PRIDE:Q9CA89PRO:PR:Q9CA89PROSITE:PS51334ProteinModelPortal:Q9CA89Proteomes:UP000006548RefSeq:NP_178104.1SMR:Q9CA89
STRING:3702.AT1G79860.1TAIR:AT1G79860tair10-symbols:ATROPGEF12tair10-symbols:MEE64tair10-symbols:ROPGEF12UniGene:At.50054UniProt:Q9CA89
Coordinates (TAIR10) chr1:-:30042172..30044092
Molecular Weight (calculated) 58048.60 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.56
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)