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AT1G79830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : golgin candidate 5
Curator
Summary (TAIR10)
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational
Description (TAIR10)
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 167116 Blast hits to 92088 proteins in 3687 species: Archae - 2004; Bacteria - 38214; Metazoa - 68462; Fungi - 14168; Plants - 9575; Viruses - 617; Other Eukaryotes - 34076 (source: NCBI BLink).
Protein Annotations
BioGrid:29540eggNOG:ENOG410Y3EGeggNOG:KOG4673EMBL:AC011717EMBL:AK221873EMBL:AK226727EMBL:CP002684
EMBL:EU249329EnsemblPlants:AT1G79830EnsemblPlants:AT1G79830.1EnsemblPlants:AT1G79830.2EnsemblPlants:AT1G79830.3entrez:844322ExpressionAtlas:Q0WVL7
GeneID:844322Genevisible:Q0WVL7GO:GO:0005794hmmpanther:PTHR13140HOGENOM:HOG000030741InParanoid:Q0WVL7InterPro:IPR022091
InterPro:IPR022092iPTMnet:Q0WVL7KEGG:ath:AT1G79830ncoils:CoilPaxDb:Q0WVL7Pfam:PF12325Pfam:PF12329
Pfam:Q0WVL7PhylomeDB:Q0WVL7PIR:C96829PRIDE:Q0WVL7PRO:PR:Q0WVL7ProteinModelPortal:Q0WVL7Proteomes:UP000006548
RefSeq:NP_001117622.1RefSeq:NP_001185442.1RefSeq:NP_178101.3STRING:3702.AT1G79830.4TAIR:AT1G79830tair10-symbols:GC5UniGene:At.27713
UniProt:Q0WVL7
Coordinates (TAIR10) chr1:-:30028110..30033508
Molecular Weight (calculated) 108360.00 Da
IEP (calculated) 4.49
GRAVY (calculated) -0.93
Length 956 amino acids
Sequence (TAIR10)
(BLAST)
001: MAWFSGKVSL GGFPDLTGAV NKFQESVKNI EKNFDNALGF DDKSDSAAED AASSMWPPAV DTKSLFDPVM SFMGNTSDEK PDTLEDSVRT ENPSQIEQKE
101: EEAGSVKLAT EQAVSVEANK ETNVRREADQ ADNPEVTETV VLDPKDDEPQ SQILLEESSE YSLQTPESSG YKTSLQPNEK LEMTASQDSQ PEQPKSEAEE
201: SQPEDSEAKE VTVENKDTVH SPVLDGQHKI TYMDETTNEQ EILGENLEGR TSSKNFEVSP DINHVNRIES PVAHPSLIFE SDGSPYESSI PKRSSSDEIS
301: ERIVDFVSRE IDSRLDTSEL NESQRSSSAT NVSDSADVIL ELEKTKKEIK MLENALQGAA RQAQAKADEI AKLMHENEQL KSVTEDLKRK SNEAEVESLR
401: EEYHQRVATL ERKVYALTKE RDTLRREQNK KSDAAALLKE KDEIINQVMA EGEELSKKQA AQEAQIRKLR AQIREAEEEK KGLITKLQSE ENKVESIKRD
501: KTATEKLLQE TIEKHQAELT SQKDYYSNAL AAAKEAQALA EERTNNEARS ELENRLKEAG ERESMLVQAL EELRQTLSKK EQQAVYREDM FRGEIEDLQR
601: RYQASERRCE ELITQVPEST RPLLRQIEAM QETSYRTAEA WAAVERTLNS RLQEAESKAA TAEERERSVN ERLSQTLSRI NVLEAQLSCL RAEQGQLSKS
701: LEKERQRAAE NRQEYLAAKE EADTLEGRAN QLEVEIRELR RKHKQELQEV LLHNELIQKD LEREKASRLD LERTARINSS AVSEQLPIAR QNSAFENGSL
801: PRKLSSASSL GSMEESYFLQ ASLDSSDKFS EKRSMPEATM SPYYMKSITP SAYEATLRQK EGELASYMTR LASMESIRDS LAEELVKMTA ECEKLRGEAD
901: RVPGIKAELE ALRQRHAAAL ELMGERDEEL EELRADIVDL KEMYREQVNM LVNKIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)