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AT1G79810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.
Computational
Description (TAIR10)
REVERSAL OF THE DET PHENOTYPE 3 (TED3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, photomorphogenesis; LOCATED IN: cytosol, peroxisome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Pex, N-terminal (InterPro:IPR006845), Zinc finger, RING-type (InterPro:IPR001841); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:29538eggNOG:ENOG41107WEeggNOG:KOG2879EMBL:AC010793EMBL:AC011717EMBL:AY064063EMBL:AY084823
EMBL:AY096373EMBL:CP002684EnsemblPlants:AT1G79810EnsemblPlants:AT1G79810.1entrez:844320ExpressionAtlas:Q9CA86Gene3D:3.30.40.10
GeneID:844320Genevisible:Q9CA86GO:GO:0004842GO:GO:0005777GO:GO:0005778GO:GO:0005829GO:GO:0006513
GO:GO:0006635GO:GO:0007031GO:GO:0008270GO:GO:0009506GO:GO:0009640GO:GO:0016558HOGENOM:HOG000265495
IntAct:Q9CA86InterPro:IPR001841InterPro:IPR006845InterPro:IPR013083InterPro:IPR017907InterPro:IPR018957KEGG:ath:AT1G79810
KO:K06664OMA:RNRHLASPaxDb:Q9CA86Pfam:PF00097Pfam:PF04757Pfam:Q9CA86Pfscan:PS50089
PhylomeDB:Q9CA86PIR:A96829PRIDE:Q9CA86PRO:PR:Q9CA86PROSITE:PS00518PROSITE:PS50089ProteinModelPortal:Q9CA86
Proteomes:UP000006548RefSeq:NP_565222.1scanprosite:PS00518SMR:Q9CA86STRING:3702.AT1G79810.1SUPFAM:SSF57850TAIR:AT1G79810
tair10-symbols:ATPEX2tair10-symbols:PEX2tair10-symbols:TED3UniGene:At.14743UniGene:At.48399UniProt:Q9CA86
Coordinates (TAIR10) chr1:+:30019944..30022156
Molecular Weight (calculated) 38176.50 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.12
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)