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AT1G79790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1011eggNOG:KOG3085EMBL:AK227909EMBL:BT004602EMBL:CP002684EnsemblPlants:AT1G79790EnsemblPlants:AT1G79790.1
entrez:844318ExpressionAtlas:Q84VZ1Gene3D:3.40.50.1000GeneID:844318GO:GO:0009507GO:GO:0016787Gramene:AT1G79790.1
hmmpanther:PTHR12725hmmpanther:PTHR12725:SF63HOGENOM:HOG000006101InterPro:IPR006439InterPro:IPR023214KEGG:ath:AT1G79790OMA:SCIFIDD
Pfam:PF13419PhylomeDB:Q84VZ1Proteomes:UP000006548RefSeq:NP_565221.1SMR:Q84VZ1STRING:3702.AT1G79790.1SUPFAM:SSF56784
TAIR:AT1G79790TIGRfam:TIGR01509TIGRFAMs:TIGR01509UniGene:At.34045UniProt:Q84VZ1
Coordinates (TAIR10) chr1:-:30016987..30018186
Molecular Weight (calculated) 27696.40 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.07
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAAMHTSA EFINLKPNMW KKNPVRASGS CCLGSSSGDE ISRKRKLPIL LFDVMDTIVR DPFYQDVPAF FGMPMKQLLE CKHPMVWIEF EKGLIDEEEL
101: ARNFFIDGRD FDLEGLKECM RSGYSYLDGM QELLQTLAAD DFEIHAFTNY PIWYNIIEDK LKLSAYLSWT FCSCIAGKRK PDPEFYLEVV GHLGVEPCDC
201: IFIDDRPTNV KCAIEIGMGG LCFENADSLA KDLSDLGINV SVPKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)