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AT1G79730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Computational
Description (TAIR10)
EARLY FLOWERING 7 (ELF7); CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated, Paf1 (InterPro:IPR007133); Has 76068 Blast hits to 37830 proteins in 1710 species: Archae - 109; Bacteria - 10838; Metazoa - 29407; Fungi - 10155; Plants - 13778; Viruses - 2155; Other Eukaryotes - 9626 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YZXEeggNOG:KOG2478EMBL:AC010793EMBL:AC011717EMBL:AY093780EMBL:BT002711EMBL:CP002684
EnsemblPlants:AT1G79730EnsemblPlants:AT1G79730.1entrez:844312GeneID:844312Genevisible:F4HQA1GO:GO:0005634GO:GO:0006355
GO:GO:0006368GO:GO:0009908GO:GO:0009910GO:GO:0016571GO:GO:0016593Gramene:AT1G79730.1hmmpanther:PTHR23188
hmmpanther:PTHR23188:SF12InParanoid:F4HQA1IntAct:F4HQA1InterPro:IPR007133iPTMnet:F4HQA1KEGG:ath:AT1G79730KO:K15174
ncoils:CoilOMA:GWARSTEPANTHER:PTHR23188PaxDb:F4HQA1Pfam:F4HQA1Pfam:PF03985PIR:C96828
PRIDE:F4HQA1PRO:PR:F4HQA1ProteinModelPortal:F4HQA1Proteomes:UP000006548RefSeq:NP_178091.2STRING:3702.AT1G79730.1TAIR:AT1G79730
tair10-symbols:ELF7UniGene:At.44777UniProt:F4HQA1
Coordinates (TAIR10) chr1:-:30000743..30003969
Molecular Weight (calculated) 67341.40 Da
IEP (calculated) 9.20
GRAVY (calculated) -1.07
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)