AT1G79670.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.972 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Wall-associated kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RESISTANCE TO FUSARIUM OXYSPORUM 1 (RFO1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to fungus; LOCATED IN: endomembrane system, integral to membrane, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Wall-associated kinase (InterPro:IPR013695), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 2 (TAIR:AT1G16130.1); Has 120817 Blast hits to 119164 proteins in 4285 species: Archae - 142; Bacteria - 13548; Metazoa - 44699; Fungi - 10352; Plants - 33861; Viruses - 488; Other Eukaryotes - 17727 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29976887..29979337 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83388.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 751 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRRRLFFSV LLSILTLFIN GPLITTAQSP PSSSTSCNRI CGGIEIPFPF GIGRRDCFLN DWYEVVCNST TSGKSLAPFL YKINRELVSI TLRSSIDSSY 101: GVVHIKSPVT SSGCSQRPVK PLPLNLTGKG SPFFITDSNR LVSVGCDNRA LITDIESQIT GCESSCDGDK SRLDKICGGY TCCQAKIPAD RPQVIGVDLE 201: SSGGNTTQGG NCKVAFLTNE TYSPANVTEP EQFYTNGFTV IELGWYFDTS DSRLTNPVGC VNLTETGIYT SAPSCVCEYG NFSGFGYSNC YCNQIGYRGN 301: PYLPGGCIDI DECEEGKGLS SCGELTCVNV PGSWRCELNG VGKIKPLFPG LVLGFPLLFL VLGIWGLIKF VKKRRKIIRK RMFFKRNGGL LLKQQLTTRG 401: GNVQSSKIFS SKELEKATDN FNMNRVLGQG GQGTVYKGML VDGRIVAVKR SKVLDEDKVE EFINEVGVLS QINHRNIVKL MGCCLETEVP ILVYEHIPNG 501: DLFKRLHHDS DDYTMTWDVR LRISVEIAGA LAYLHSAAST PVYHRDVKTT NILLDEKYRA KVSDFGTSRS INVDQTHLTT LVAGTFGYLD PEYFQTSQFT 601: DKSDVYSFGV VLVELITGEK PFSVMRPEEN RGLVSHFNEA MKQNRVLDIV DSRIKEGCTL EQVLAVAKLA RRCLSLKGKK RPNMREVSVE LERIRSSPED 701: LELHIEEEDE EECAMEINMD DSWSVDMTAP ASLFDLSPKL DVEPLVPQRT W |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)