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AT1G79590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15342965 (2004): plant-type vacuole
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 52
Curator
Summary (TAIR10)
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational
Description (TAIR10)
syntaxin of plants 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:29516eggNOG:ENOG410ZZA3eggNOG:KOG3202EMBL:AC010793
EMBL:AF355756EMBL:AY086285EMBL:BT003941EMBL:BT006106
EMBL:CP002684EnsemblPlants:AT1G79590EnsemblPlants:AT1G79590.1EnsemblPlants:AT1G79590.2
entrez:844297GeneID:844297Genevisible:Q94KK7GO:GO:0000149
GO:GO:0005484GO:GO:0005773GO:GO:0005794GO:GO:0006886
GO:GO:0006906GO:GO:0010008GO:GO:0016021GO:GO:0016192
GO:GO:0031201GO:GO:0031902GO:GO:0048278Gramene:AT1G79590.1
Gramene:AT1G79590.2hmmpanther:PTHR19957hmmpanther:PTHR19957:SF119HOGENOM:HOG000238738
InParanoid:Q94KK7IntAct:Q94KK7InterPro:IPR000727InterPro:IPR006012
iPTMnet:Q94KK7KEGG:ath:AT1G79590KO:K08503OMA:DSWIREY
PaxDb:Q94KK7Pfam:PF05739Pfam:Q94KK7Pfscan:PS50192
PhylomeDB:Q94KK7PIR:C96827PRIDE:Q94KK7PRO:PR:Q94KK7
PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q94KK7Proteomes:UP000006548
RefSeq:NP_001031301.1RefSeq:NP_565213.1scanprosite:PS00914SMART:SM00397
STRING:3702.AT1G79590.1SUPFAM:SSF58038SwissPalm:Q94KK7TAIR:AT1G79590
tair10-symbols:ATSYP52tair10-symbols:SYP52TMHMM:TMhelixUniGene:At.19840
UniProt:Q94KK7
Coordinates (TAIR10) chr1:+:29947064..29948304
Molecular Weight (calculated) 26109.70 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.30
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)