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AT1G79560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23851315 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:16618929 (2006): unclear
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FTSH protease 12
Curator
Summary (TAIR10)
Encodes an FtsH protease that is localized to the chloroplast. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
FTSH protease 12 (FTSH12); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:29513BRENDA:3.4.24.B20EC:3.4.24.-eggNOG:COG0465eggNOG:KOG0731EMBL:AC007202EMBL:AY035166
EMBL:CP002684EnsemblPlants:AT1G79560EnsemblPlants:AT1G79560.1entrez:844294ExpressionAtlas:Q9SAJ3Gene3D:3.40.50.300GeneID:844294
Genevisible:Q9SAJ3GO:GO:0004176GO:GO:0004222GO:GO:0005524GO:GO:0005739GO:GO:0006508GO:GO:0008237
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009941GO:GO:0016021GO:GO:0046872Gramene:AT1G79560.1
hmmpanther:PTHR23076hmmpanther:PTHR23076:SF44HOGENOM:HOG000090030InParanoid:Q9SAJ3InterPro:IPR000642InterPro:IPR003593InterPro:IPR003959
InterPro:IPR027417iPTMnet:Q9SAJ3KEGG:ath:AT1G79560KO:K03798MEROPS:M41.A06OMA:QLFDMAYPaxDb:Q9SAJ3
Pfam:PF00004Pfam:PF01434Pfam:Q9SAJ3PhylomeDB:Q9SAJ3PIR:A96827PRIDE:Q9SAJ3PRO:PR:Q9SAJ3
ProteinModelPortal:Q9SAJ3Proteomes:UP000006548RefSeq:NP_565212.1SMART:SM00382SMR:Q9SAJ3STRING:3702.AT1G79560.1SUPFAM:SSF140990
SUPFAM:SSF52540TAIR:AT1G79560tair10-symbols:EMB1047tair10-symbols:EMB156tair10-symbols:EMB36tair10-symbols:FTSH12TMHMM:TMhelix
UniGene:At.48395UniGene:At.66914UniProt:B9DHQ6UniProt:Q9SAJ3
Coordinates (TAIR10) chr1:+:29926976..29932308
Molecular Weight (calculated) 115111.00 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.34
Length 1008 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEIAISYKPN PLISSSTQLL KRSKSFGLVR FPAKYGLGAT RKKQLFRVYA SESSSGSSSN SDGGFSWVRL AQSIRLGAER IGEKIGESVK TEIGFDSEEA
0101: SGRVNEYVAR VKDSVHKGHH ELTRFKNETV PSFIDWNKWE HWKDIRNWDG KRVAALFIYA FALLLSCQRV YVAIQAPRVE RERRELTESF MEALIPEPSP
0201: GNIEKFKRNM WRKATPKGLK LKRFIEAPDG TLVHDSSYVG ENAWDDDLET TEGSLKKIIG RNARIQTEAK KKLSQDLGVS GEIGDSVGNW RERLATWKEM
0301: LEREKLSEQL NSSAAKYVVE FDMKEVEKSL REDVIGRTSE TEGTRALWIS KRWWRYRPKL PYTYFLQKLD SSEVAAVVFT EDLKRLYVTM KEGFPLEYIV
0401: DIPLDPYLFE TICNAGVEVD LLQKRQIHYF MKVFIALLPG ILILWFIRES AMLLLITSKR FLYKKYNQLF DMAYAENFIL PVGDVSETKS MYKEVVLGGD
0501: VWDLLDELMI YMGNPMQYYE KDVAFVRGVL LSGPPGTGKT LFARTLAKES GLPFVFASGA EFTDSEKSGA AKINEMFSIA RRNAPAFVFV DEIDAIAGRH
0601: ARKDPRRRAT FEALIAQLDG EKEKTGIDRF SLRQAVIFIC ATNRPDELDL EFVRSGRIDR RLYIGLPDAK QRVQIFGVHS AGKNLAEDID FGKLVFRTVG
0701: FSGADIRNLV NEAAIMSVRK GRSYIYQQDI VDVLDKQLLE GMGVLLTEEE QQKCEQSVSY EKKRLLAVHE AGHIVLAHLF PRFDWHAFSQ LLPGGKETAV
0801: SVFYPREDMV DQGYTTFGYM KMQMVVAHGG RCAERVVFGD NVTDGGKDDL EKITKIAREM VISPQSARLG LTQLVKKIGM VDLPDNPDGE LIKYRWDHPH
0901: VMPAEMSVEV SELFTRELTR YIEETEELAM NALRANRHIL DLITRELLEK SRITGLEVEE KMKDLSPLMF EDFVKPFQIN PDDEELLPHK DRVSYQPVDL
1001: RAAPLHRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)