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AT1G79500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.
Computational
Description (TAIR10)
AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G16340.3); Has 7925 Blast hits to 7923 proteins in 2056 species: Archae - 64; Bacteria - 5004; Metazoa - 4; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2795 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G79500-MONOMERBioCyc:ARA:GQT-2463-MONOMERBioCyc:ARA:GQT-2464-MONOMERBioCyc:ARA:GQT-2465-MONOMER
BioCyc:ARA:GQT-423-MONOMERBioCyc:MetaCyc:AT1G79500-MONOMERBioGrid:29507BRENDA:2.5.1.55
EC:2.5.1.55eggNOG:COG2877EMBL:AB059683EMBL:AC007202
EMBL:AF372947EMBL:AK317018EMBL:AY113162EMBL:CP002684
EnsemblPlants:AT1G79500EnsemblPlants:AT1G79500.1EnsemblPlants:AT1G79500.2EnsemblPlants:AT1G79500.3
EnsemblPlants:AT1G79500.4entrez:844288ExpressionAtlas:Q9AV97Gene3D:3.20.20.70
GeneID:844288Genevisible:Q9AV97GO:GO:0005737GO:GO:0008676
GO:GO:0009860GO:GO:0010306GO:GO:0019294GO:GO:0048868
gramene_plant_reactome:1119532gramene_plant_reactome:6874203HAMAP:MF_00056hmmpanther:PTHR21057
hmmpanther:PTHR21057:SF2HOGENOM:HOG000023021InParanoid:Q9AV97InterPro:IPR006218
InterPro:IPR006269InterPro:IPR013785KEGG:00540+2.5.1.55KEGG:ath:AT1G79500
KO:K01627OMA:FRGIPTMPANTHER:PTHR21057:SF2PaxDb:Q9AV97
Pfam:PF00793Pfam:Q9AV97PhylomeDB:Q9AV97PIR:C96826
PRIDE:Q9AV97PRO:PR:Q9AV97ProteinModelPortal:Q9AV97Proteomes:UP000006548
RefSeq:NP_001031300.1RefSeq:NP_178068.1RefSeq:NP_849906.1RefSeq:NP_974176.1
SMR:Q9AV97STRING:3702.AT1G79500.5SUPFAM:SSF51569TAIR:AT1G79500
tair10-symbols:AtkdsA1TIGRfam:TIGR01362TIGRFAMs:TIGR01362UniGene:At.19978
unipathway:UPA00030unipathway:UPA00357UniProt:Q9AV97
Coordinates (TAIR10) chr1:+:29903604..29905989
Molecular Weight (calculated) 31658.60 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.03
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATSLLYNQ LKAAEPFFLL AGPNVIESEE HILRMAKHIK DISTKVGLPL VFKSSFDKAN RTSSKSFRGP GMAEGLKILE KVKVAYDLPI VTDVHESSQC
101: EAVGKVADII QIPAFLCRQT DLLVAAAQTG KIINIKKGQF CAPSVMENSA EKIRLAGNPN VMVCERGTMF GYNDLIVDPR NFEWMREANC PVVADITHSL
201: QQPAGKKLDG GGVASGGLRE LIPCIARTAV AVGVDGIFME VHDDPLSAPV DGPTQWPLRH LEELLEELIA IARVTKGKQR LQIDLTPYRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)