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AT1G79450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ALA-interacting subunit 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ALA-interacting subunit 5 (ALIS5); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G16360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5035eggNOG:KOG2952EMBL:AC007202EMBL:AY088777EMBL:BX816946EMBL:CP002684EnsemblPlants:AT1G79450
EnsemblPlants:AT1G79450.1entrez:844283GeneID:844283Genevisible:Q8L8W0GO:GO:0000139GO:GO:0005789GO:GO:0005886
GO:GO:0016021GO:GO:0031902hmmpanther:PTHR10926hmmpanther:PTHR10926:SF28HOGENOM:HOG000209056InParanoid:Q8L8W0InterPro:IPR005045
KEGG:ath:AT1G79450OMA:HPVYVYYPANTHER:PTHR10926PaxDb:Q8L8W0Pfam:PF03381Pfam:Q8L8W0PhylomeDB:Q8L8W0
PIR:F96825PIRSF:PIRSF015840PRIDE:Q8L8W0PRO:PR:Q8L8W0Proteomes:UP000006548RefSeq:NP_565210.1RefSeq:NP_974175.1
STRING:3702.AT1G79450.1TAIR:AT1G79450tair10-symbols:ALIS5TMHMM:TMhelixUniGene:At.34111UniProt:Q8L8W0
Coordinates (TAIR10) chr1:+:29887831..29889904
Molecular Weight (calculated) 38910.80 Da
IEP (calculated) 9.81
GRAVY (calculated) -0.23
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTAASSTV GGGGSSEISG VKKTSKRPKY SRFTQQELPA CKPILTPRWV ILTFLVAGVV FIPLGVICLF ASQGVVEIVD RYDTDCIPTS SRNNMVAYIQ
101: GEGDKICKRT ITVTKAMKHP VYVYYQLENF YQNHRRYVKS RNDAQLRSPK EEHDVKTCAP EDNVGGEPIV PCGLVAWSLF NDTYSFSRNS QQLLVNKKGI
201: SWKSDRENKF GKNVFPKNFQ KGAPIGGGTL NISKPLSEQE DLIVWMRTAA LPTFRKLYGK IETDLHAGDT ITVLLQNNYN TYSFNGQKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VTFAVLYLVK PRQLGDPSYL SWNRSAGGLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)