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AT1G79440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : aldehyde dehydrogenase 5F1
Curator
Summary (TAIR10)
Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).
Computational
Description (TAIR10)
aldehyde dehydrogenase 5F1 (ALDH5F1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, NAD or NADH binding, copper ion binding, succinate-semialdehyde dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Succinic semialdehyde dehydrogenase (InterPro:IPR010102); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 62487 Blast hits to 62143 proteins in 3037 species: Archae - 481; Bacteria - 36218; Metazoa - 2614; Fungi - 2131; Plants - 1502; Viruses - 0; Other Eukaryotes - 19541 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G79440-MONOMERBRENDA:1.2.1.24EC:1.2.1.24eggNOG:COG1012eggNOG:KOG2451EMBL:AC007202EMBL:AF117335
EMBL:AF428367EMBL:AY056147EMBL:CP002684EnsemblPlants:AT1G79440EnsemblPlants:AT1G79440.1entrez:844282Gene3D:3.40.309.10
Gene3D:3.40.605.10GeneID:844282Genevisible:Q9SAK4GO:GO:0004029GO:GO:0004777GO:GO:0005507GO:GO:0005739
GO:GO:0005759GO:GO:0006540GO:GO:0009013GO:GO:0009408GO:GO:0009416GO:GO:0009450GO:GO:0009507
GO:GO:0009570GO:GO:0051287GO:GO:0072593Gramene:AT1G79440.1hmmpanther:PTHR11699hmmpanther:PTHR11699:SF49HOGENOM:HOG000271509
InParanoid:Q9SAK4InterPro:IPR010102InterPro:IPR015590InterPro:IPR016160InterPro:IPR016161InterPro:IPR016162InterPro:IPR016163
InterPro:IPR029510KEGG:ath:AT1G79440KO:K17761OMA:WHKLIEQPaxDb:Q9SAK4Pfam:PF00171Pfam:Q9SAK4
PhylomeDB:Q9SAK4PIR:E96825PRIDE:Q9SAK4PRO:PR:Q9SAK4PROSITE:PS00070PROSITE:PS00687ProteinModelPortal:Q9SAK4
Proteomes:UP000006548Reactome:R-ATH-916853RefSeq:NP_178062.1scanprosite:PS00070scanprosite:PS00687SMR:Q9SAK4STRING:3702.AT1G79440.1
SUPFAM:SSF53720TAIR:AT1G79440tair10-symbols:ALDH5F1tair10-symbols:SSADHtair10-symbols:SSADH1TIGRfam:TIGR01780TIGRFAMs:TIGR01780
UniGene:At.11884UniPathway:UPA00733UniProt:Q9SAK4
Coordinates (TAIR10) chr1:-:29882525..29887275
Molecular Weight (calculated) 56562.30 Da
IEP (calculated) 6.91
GRAVY (calculated) 0.04
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)